JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA6B_chr15_72649697_72674599	0/0	c0030	2082	1	1	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	c0031	2082	1	0	0	1	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6C_chr15_75253334_75278455	1/1	c0001	2082	106	22	15	53	5	9	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0002	2082	9	0	0	9	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0003	2082	8	1	0	7	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0004	2082	6	0	0	6	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0005	2082	6	2	0	3	1	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0006	2082	6	0	3	2	0	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0007	2082	6	0	3	3	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0008	2082	5	0	4	0	1	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0009	2082	4	0	0	4	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0010	2082	3	0	1	2	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0011	2082	2	0	0	2	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0012	2082	2	2	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0013	2082	2	1	0	0	0	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0014	2082	1	1	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0015	2082	1	1	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0016	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0017	2082	1	0	1	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0018	687	1	0	0	0	0	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0019	847	1	0	0	0	1	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0020	2082	1	1	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0021	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0022	2082	1	0	1	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0023	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0024	2082	1	1	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0025	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0026	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0027	2082	1	1	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0028	2066	1	1	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0029	2082	1	0	0	0	0	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0030	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0031	2082	1	0	1	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0032	2082	1	0	0	0	0	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0033	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0034	2082	1	0	1	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0035	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0036	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0037	2082	1	1	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0038	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0039	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0040	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0041	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0042	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0043	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0044	2082	1	0	1	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0045	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0046	2082	1	1	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0047	2082	1	0	1	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	c0048	2082	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455