JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA6D_chr15_75277835_75300530	1/1	c0001	2082	118	18	19	57	6	16	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0002	2082	18	0	0	16	0	2	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0003	2082	17	9	5	3	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0004	2082	12	3	1	4	1	3	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0005	2082	7	1	2	0	0	4	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0006	2082	4	0	0	4	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0007	2082	3	0	1	0	1	1	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0008	2082	3	0	0	2	0	1	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0009	2082	3	0	0	3	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0010	2082	3	2	1	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0011	2082	3	0	2	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0012	2082	3	0	2	0	1	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0013	2082	2	0	2	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0014	2082	2	0	0	2	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0015	2082	2	1	1	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0016	2082	2	0	1	0	0	1	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0017	2082	2	0	0	2	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0018	2082	2	0	0	2	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0019	2082	2	1	0	0	0	1	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0020	2082	2	0	0	2	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0021	2082	2	2	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0022	2103	1	0	1	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0023	2082	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0024	2082	1	0	0	0	0	1	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0025	2082	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0026	2082	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0027	2082	1	0	0	0	1	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0028	2082	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0029	2082	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0030	2082	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0031	2082	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0032	2082	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0033	2082	1	0	1	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0034	2082	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0035	2082	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0036	2082	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0037	2082	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0038	2985	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0039	2082	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0040	2082	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0041	26368	1	0	1	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0042	2082	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	c0043	2082	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6L10_chr15_82334993_82354475	0/0	c0001	1443	61	23	7	26	2	3	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	c0002	1611	56	3	15	33	2	3	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	c0003	1611	47	8	8	22	5	4	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/1	c0004	1569	14	3	7	0	2	1	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	c0005	1593	12	0	0	0	0	12	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	c0006	1593	8	0	0	8	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	c0007	1569	7	4	2	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475