Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AHNAK_chr11_62510902_62551806	0/0	c0047	17673	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0048	17673	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0049	17673	1	0	0	0	0	1	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0050	17673	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0051	17673	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0052	17676	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0053	17676	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0054	17676	1	0	1	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0055	17676	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0056	17676	1	0	1	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0057	17676	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	c0058	17676	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHRR_chr5_316714_443285	1/0	c0001	2094	115	31	21	48	2	12	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0002	2094	65	6	17	30	2	10	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0003	2094	26	24	2	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/1	c0004	2094	26	0	14	0	4	7	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0005	2094	12	2	8	2	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0006	2094	4	4	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0007	2094	3	3	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0008	2094	2	0	1	0	0	1	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0009	2094	2	2	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0010	2094	1	0	0	1	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0011	2094	1	0	0	1	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0012	2094	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0013	2094	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0014	2094	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0015	2094	1	0	1	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0016	2094	1	0	0	0	1	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0017	2094	1	0	0	0	0	1	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0018	2094	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0019	2094	1	0	0	0	0	1	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0020	2094	1	0	0	0	1	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0021	2094	1	0	0	1	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	c0022	2094	1	0	0	1	0	0	copy fasta	AHRR	chr5	316714	443285
AHR_chr7_17293652_17351147	1/1	c0001	2547	228	52	51	86	13	24	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	c0002	2547	114	30	12	63	2	7	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	c0003	2547	13	1	1	7	1	3	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	c0004	2547	3	3	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	c0005	2547	2	0	2	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	c0006	2547	2	0	0	2	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	c0007	2547	1	1	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	c0008	2547	1	1	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	c0009	2547	1	0	1	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	c0010	2547	1	0	1	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	c0011	2547	1	0	0	1	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	c0012	2547	1	1	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	c0013	2547	1	1	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	c0014	2547	1	0	0	1	0	0	copy fasta	AHR	chr7	17293652	17351147
AHSA1_chr14_77453093_77474472	0/1	c0001	1017	131	8	26	78	3	15	copy fasta	AHSA1	chr14	77453093	77474472
AHSA1_chr14_77453093_77474472	1/0	c0002	1017	130	58	28	14	8	21	copy fasta	AHSA1	chr14	77453093	77474472