JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA6L10_chr15_82334993_82354475	0/0	c0058	1590	1	0	0	0	0	1	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	c0059	1443	1	0	1	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	c0060	1611	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	c0061	1611	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	c0062	1590	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L1_chr15_23122066_23141822	0/0	c0001	1995	67	13	8	30	4	12	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0002	1989	17	2	7	0	2	6	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0003	2082	16	1	5	9	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0004	2007	6	0	5	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0005	1995	4	0	0	1	0	3	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0006	1971	4	4	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0007	2007	3	1	2	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0008	2049	3	3	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0009	1971	3	1	2	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0010	1971	3	3	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0011	1971	3	3	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0012	1995	3	0	0	2	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0013	1974	2	1	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0014	1989	2	0	1	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0015	1989	2	1	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0016	1992	2	1	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0017	1971	2	2	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0018	2343	2	2	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0019	1974	2	0	0	0	0	2	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0020	1953	2	1	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0021	1962	2	0	2	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0022	2067	2	2	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0023	1953	2	2	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0024	1998	1	0	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0025	1952	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0026	2097	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0027	2103	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0028	2061	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0029	2025	1	0	0	0	1	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0030	2136	1	0	0	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0031	2025	1	0	0	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0032	2307	1	0	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0033	2379	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0034	2007	1	0	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0035	1986	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0036	2007	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0037	2028	1	0	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0038	2043	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0039	1989	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0040	1968	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0041	2025	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0042	1821	1	0	0	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0043	2343	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0044	1971	1	0	0	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	c0045	1998	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822