JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA6L22_chr15_22453903_22474226	0/0	c0023	2508	2	2	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0024	2364	2	0	0	2	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0025	2601	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0026	2691	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0027	2619	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0028	2433	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0029	597	1	0	0	0	0	1	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0030	2601	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0031	2601	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0032	2454	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0033	2541	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0034	2601	1	1	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0035	2559	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0036	2415	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0037	2454	1	0	0	0	0	1	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0038	2601	1	0	0	0	1	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0039	2601	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0040	2580	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0041	2415	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0042	2436	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0043	2502	1	1	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0044	2583	1	0	0	0	1	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0045	2418	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0046	2562	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0047	2394	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0048	2730	1	0	0	0	1	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0049	2436	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0050	2583	1	0	1	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0051	2334	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0052	2601	1	0	0	0	1	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0053	2565	1	0	1	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0054	2388	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0055	3123	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0056	2526	1	0	0	0	0	1	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0057	2547	1	0	1	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0058	2400	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0059	2400	1	0	1	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0060	2688	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0061	2565	1	0	0	0	0	1	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0062	2487	1	1	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0063	2508	1	1	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0064	2511	1	0	1	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0065	2349	1	1	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0066	2370	1	1	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0067	2370	1	1	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	c0068	2469	1	0	1	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L24_chr15_28342851_28363084	0/0	c0001	2481	53	0	17	11	10	15	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0002	2517	26	0	6	11	0	9	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0003	2481	24	0	0	23	0	1	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	c0004	2517	12	0	1	11	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084