JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA6L26_chr15_23319535_23339196	0/0	c0031	2067	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0032	2025	1	0	1	0	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0033	2020	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0034	2100	1	1	0	0	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0035	1980	1	0	0	0	1	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0036	1962	1	0	0	0	0	1	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0037	2154	1	1	0	0	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0038	1965	1	0	1	0	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0039	1944	1	0	0	0	0	1	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0040	1983	1	1	0	0	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0041	1983	1	0	1	0	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0042	2004	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0043	2031	1	0	0	0	0	1	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0044	1947	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0045	1968	1	0	1	0	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0046	1986	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0047	1956	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0048	1914	1	0	1	0	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0049	1914	1	0	1	0	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0050	1956	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0051	1956	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0052	1908	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0053	1866	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0054	1935	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0055	1956	1	0	1	0	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0056	2040	1	0	0	0	0	1	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0057	1989	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0058	1947	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0059	1968	1	1	0	0	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0060	1968	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	c0061	1956	1	1	0	0	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L2_chr15_23434038_23452243	0/1	c0001	3507	170	10	40	91	8	20	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0002	2753	49	2	5	32	3	7	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0003	3486	14	13	1	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0004	2732	13	12	1	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0005	3507	10	0	8	0	0	2	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0006	3507	9	1	2	0	2	4	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0007	3507	9	0	0	9	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0008	3462	8	8	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0009	3588	7	7	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0010	2729	5	5	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0011	3484	5	5	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0012	1622	4	4	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0013	3507	4	0	2	0	0	2	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0014	3507	4	0	3	0	1	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0015	3486	4	0	4	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0016	2732	3	3	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0017	3486	3	0	0	3	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0018	3507	3	0	3	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0019	3507	3	0	0	3	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243