JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA6L2_chr15_23434038_23452243	0/0	c0020	3444	2	2	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0021	3481	2	0	0	0	0	2	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0022	2732	2	2	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0023	2750	2	2	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0024	2732	2	2	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0025	2753	2	2	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0026	3532	2	2	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0027	3529	2	0	0	0	0	2	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0028	3507	2	0	2	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0029	3507	1	0	1	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0030	3528	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0031	3423	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0032	2628	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0033	3507	1	0	0	0	0	1	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0034	2753	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0035	3507	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	1/0	c0036	2730	1	0	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0037	2750	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0038	2699	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0039	3484	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0040	3484	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0041	3484	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0042	3510	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0043	3486	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0044	2732	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0045	3507	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0046	3507	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0047	3525	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0048	3507	1	0	1	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0049	3528	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0050	3486	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0051	3506	1	0	0	0	1	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0052	3507	1	0	1	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0053	3508	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0054	3508	1	0	1	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0055	3508	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0056	3486	1	0	1	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0057	3571	1	0	0	0	0	1	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0058	3507	1	0	0	0	0	1	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0059	3486	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0060	3507	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0061	3422	1	0	0	0	0	1	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0062	3486	1	0	1	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0063	3676	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0064	3509	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0065	3507	1	0	0	0	1	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0066	3028	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0067	3507	1	0	0	0	0	1	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0068	3443	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0069	3485	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243