JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA6L2_chr15_23434038_23452243	0/0	c0070	3486	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0071	3507	1	0	1	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0072	3588	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0073	3489	1	0	1	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0074	3507	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0075	2753	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0076	3507	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0077	3507	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0078	2732	1	0	1	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	c0079	3507	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L4_chr15_84230773_84250358	0/0	c0001	1746	65	19	4	30	1	11	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0002	1746	24	2	0	18	0	4	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0003	1851	15	0	0	15	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0004	1830	9	3	4	0	2	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0005	1830	7	7	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0006	1746	7	0	0	7	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0007	1746	6	6	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0008	1830	5	5	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0009	1746	5	4	0	0	0	1	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0010	1746	5	5	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0011	1728	4	0	0	4	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0012	1788	4	0	0	4	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0013	1746	4	3	0	0	1	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0014	1830	4	3	1	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0015	1830	3	0	0	3	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0016	1746	3	3	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0017	1746	3	3	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0018	1746	3	3	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0019	1830	3	0	0	3	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0020	1851	3	0	0	3	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0021	1851	3	0	2	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0022	1746	3	0	0	3	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0023	1746	3	3	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0024	1746	3	0	0	3	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0025	1746	2	2	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0026	1746	2	0	0	2	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0027	1746	2	2	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0028	1830	2	0	2	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0029	1830	2	2	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0030	1851	2	0	2	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0031	1830	2	0	0	2	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0032	1746	2	0	0	2	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0033	1725	2	0	2	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0034	1824	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0035	1746	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0036	1824	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0037	1725	1	0	0	0	0	1	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0038	1746	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0039	1914	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0040	1851	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358