JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA6L4_chr15_84230773_84250358	0/0	c0041	1830	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0042	1830	1	0	0	0	0	1	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0043	1746	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0044	1746	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0045	1746	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0046	1746	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0047	1728	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0048	1746	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0049	1746	1	0	0	0	0	1	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0050	1746	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0051	1830	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0052	1830	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0053	1830	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0054	1746	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0055	1728	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0056	1830	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0057	1746	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0058	1746	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0059	1851	1	0	1	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0060	1851	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0061	1851	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0062	1746	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0063	1830	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0064	1851	1	0	1	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0065	1725	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0066	1746	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0067	1746	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0068	1634	1	0	0	0	0	1	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0069	1809	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0070	1746	1	0	1	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	c0071	1746	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	1/0	c0072	1725	1	0	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L6_chr15_20526856_20546800	0/0	c0001	2175	46	4	4	37	0	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	1/0	c0002	2175	35	4	3	23	1	3	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0003	2205	17	0	0	15	0	2	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0004	2151	15	0	2	12	1	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0005	2133	9	2	1	0	0	6	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0006	2082	7	0	7	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0007	2253	6	5	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0008	2187	5	0	0	4	0	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0009	2175	5	0	1	4	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0010	2175	4	0	3	0	0	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0011	2157	4	2	0	2	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0012	2253	3	3	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0013	1983	3	0	2	0	0	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0014	2151	3	0	1	2	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0015	2001	3	0	1	0	2	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0016	2115	3	1	1	0	0	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0017	2001	2	2	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0018	2193	2	0	0	2	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800