Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AHSA1_chr14_77453093_77474472	0/0	c0003	1017	30	15	8	0	3	4	copy fasta	AHSA1	chr14	77453093	77474472
AHSA1_chr14_77453093_77474472	0/0	c0004	1017	10	9	1	0	0	0	copy fasta	AHSA1	chr14	77453093	77474472
AHSA1_chr14_77453093_77474472	0/0	c0005	1017	2	2	0	0	0	0	copy fasta	AHSA1	chr14	77453093	77474472
AHSA1_chr14_77453093_77474472	0/0	c0006	1017	2	0	2	0	0	0	copy fasta	AHSA1	chr14	77453093	77474472
AHSA1_chr14_77453093_77474472	0/0	c0007	1017	1	1	0	0	0	0	copy fasta	AHSA1	chr14	77453093	77474472
AHSA1_chr14_77453093_77474472	0/0	c0008	1017	1	0	1	0	0	0	copy fasta	AHSA1	chr14	77453093	77474472
AHSA1_chr14_77453093_77474472	0/0	c0009	1017	1	1	0	0	0	0	copy fasta	AHSA1	chr14	77453093	77474472
AHSG_chr3_186608060_186626318	0/0	c0001	1104	202	34	39	98	9	22	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	c0002	1104	93	32	10	40	4	7	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	1/1	c0003	1104	85	11	25	36	3	8	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	c0004	1104	35	10	7	14	1	3	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	c0005	1104	8	7	1	0	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	c0006	1104	7	0	1	0	1	5	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	c0007	1104	3	3	0	0	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	c0008	1104	2	0	2	0	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	c0009	1104	1	0	0	0	0	1	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	c0010	1104	1	0	0	1	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	c0011	1104	1	0	1	0	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	c0012	1104	1	1	0	0	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	c0013	1104	1	0	0	1	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSP_chr16_31522900_31533803	1/1	c0001	309	269	53	64	117	15	18	copy fasta	AHSP	chr16	31522900	31533803
AHSP_chr16_31522900_31533803	0/0	c0002	309	111	40	9	39	1	22	copy fasta	AHSP	chr16	31522900	31533803
AHSP_chr16_31522900_31533803	0/0	c0003	309	5	5	0	0	0	0	copy fasta	AHSP	chr16	31522900	31533803
AHSP_chr16_31522900_31533803	0/0	c0004	309	2	0	0	2	0	0	copy fasta	AHSP	chr16	31522900	31533803
AHSP_chr16_31522900_31533803	0/0	c0005	309	1	0	1	0	0	0	copy fasta	AHSP	chr16	31522900	31533803
AICDA_chr12_8597170_8617859	1/1	c0001	597	226	57	23	119	5	20	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	c0002	597	194	26	49	79	13	27	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	c0003	598	17	3	1	13	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	c0004	598	9	3	3	2	0	1	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	c0005	597	2	0	2	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	c0006	597	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	c0007	597	1	0	0	1	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	c0008	597	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	c0009	597	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	c0010	598	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	c0011	597	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	c0012	597	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	c0013	597	1	0	1	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	c0014	597	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	c0015	597	1	0	1	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AIDA_chr1_222663013_222717491	1/1	c0001	921	361	86	60	158	12	43	copy fasta	AIDA	chr1	222663013	222717491
AIDA_chr1_222663013_222717491	0/0	c0002	921	6	6	0	0	0	0	copy fasta	AIDA	chr1	222663013	222717491
AIDA_chr1_222663013_222717491	0/0	c0003	921	1	0	0	0	0	1	copy fasta	AIDA	chr1	222663013	222717491
AIF1L_chr9_131091531_131128144	1/1	c0001	453	420	90	74	188	16	50	copy fasta	AIF1L	chr9	131091531	131128144
AIF1L_chr9_131091531_131128144	0/0	c0002	453	4	4	0	0	0	0	copy fasta	AIF1L	chr9	131091531	131128144
AIF1_chr6_31610234_31622015	0/1	c0001	444	379	68	73	173	18	46	copy fasta	AIF1	chr6	31610234	31622015
AIF1_chr6_31610234_31622015	0/0	c0002	444	56	26	7	22	0	1	copy fasta	AIF1	chr6	31610234	31622015
AIF1_chr6_31610234_31622015	0/0	c0003	444	1	0	0	1	0	0	copy fasta	AIF1	chr6	31610234	31622015
AIF1_chr6_31610234_31622015	0/0	c0004	444	1	0	0	0	0	1	copy fasta	AIF1	chr6	31610234	31622015
AIFM1_chrX_130124362_130170841	1/1	c0001	1842	128	8	24	77	4	13	copy fasta	AIFM1	chrX	130124362	130170841