JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA6L6_chr15_20526856_20546800	0/0	c0019	2175	2	0	0	2	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0020	2214	2	1	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0021	2217	2	0	2	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0022	2082	2	2	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0023	2157	2	0	0	2	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0024	2019	1	0	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0025	2229	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0026	2271	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0027	2253	1	0	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0028	2205	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0029	1983	1	0	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/1	c0030	2193	1	0	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0031	2235	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0032	2235	1	0	0	0	0	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0033	2187	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0034	2175	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0035	2175	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0036	2175	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0037	2133	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0038	2175	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0039	2175	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0040	2133	1	0	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0041	2175	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0042	2175	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0043	2175	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0044	2175	1	0	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0045	2175	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0046	2175	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0047	2175	1	0	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0048	2175	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0049	2133	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0050	2154	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0051	2157	1	0	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0052	2178	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0053	2151	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0054	2151	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	c0055	2133	1	0	0	0	0	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L7_chr15_28836832_28853644	0/1	c0001	1851	223	18	54	113	13	24	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0002	1830	46	6	7	22	2	9	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0003	1767	40	1	12	25	0	2	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0004	1755	15	10	1	2	0	2	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0005	1755	8	8	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0006	1746	8	7	1	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0007	1830	6	0	4	2	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0008	1767	5	0	0	5	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0009	1746	4	4	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0010	1767	4	4	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0011	1704	4	4	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0012	1788	3	2	1	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0013	1767	3	3	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644