JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA6L7_chr15_28836832_28853644	0/0	c0014	1704	3	3	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0015	1872	3	0	0	0	0	3	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0016	1809	2	2	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0017	1704	2	2	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0018	1767	2	2	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0019	1830	2	0	1	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	1/0	c0020	1869	2	0	0	0	1	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0021	1851	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0022	1767	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0023	1767	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0024	1914	1	0	1	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0025	1851	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0026	1766	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0027	1788	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0028	1767	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0029	1788	1	0	0	0	0	1	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0030	1830	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0031	1914	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0032	1830	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0033	1767	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0034	1704	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0035	1755	1	0	0	0	0	1	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0036	1851	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0037	1734	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0038	1851	1	0	0	0	0	1	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0039	1746	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0040	1767	1	0	1	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0041	1809	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0042	1809	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0043	1851	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0044	1704	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0045	1851	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0046	1809	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0047	1872	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0048	1851	1	0	1	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0049	1851	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0050	1851	1	0	0	0	0	1	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0051	1851	1	0	1	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0052	1851	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0053	1566	1	0	1	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0054	1767	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0055	1851	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0056	1746	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	c0057	1755	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L9_chr15_82424816_82444153	0/0	c0001	1299	153	4	32	101	4	12	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0002	1299	97	39	7	43	3	5	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0003	1317	67	11	12	24	6	14	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0004	1317	22	0	0	22	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/1	c0005	1299	19	2	11	0	3	2	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0006	1299	11	3	5	2	1	0	copy fasta	GOLGA6L9	chr15	82424816	82444153