JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA6L9_chr15_82424816_82444153	0/0	c0007	1317	8	0	0	0	0	8	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0008	1317	8	7	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0009	1299	8	0	1	7	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0010	1320	7	0	0	4	1	2	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0011	1299	6	5	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0012	1299	5	0	3	0	0	2	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0013	1299	5	0	0	5	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0014	1299	5	5	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0015	1317	3	3	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0016	1299	3	3	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0017	1299	2	2	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0018	1299	2	2	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0019	1299	2	0	0	2	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0020	1299	2	0	0	2	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0021	1299	2	2	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0022	1317	1	0	0	0	0	1	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0023	1317	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0024	1299	1	1	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0025	1299	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0026	1299	1	1	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0027	1299	1	1	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0028	1299	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0029	1299	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0030	1299	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0031	1278	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0032	1299	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0033	1317	1	1	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0034	1299	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0035	1299	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0036	1299	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0037	1299	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0038	1299	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	c0039	1299	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA7B_chr10_97844843_97876578	1/1	c0001	504	336	94	62	128	16	34	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7_chr8_41485582_41515980	1/1	c0001	414	313	74	59	135	14	29	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	c0002	414	36	12	15	0	4	5	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	c0003	414	1	0	0	1	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA8A_chr15_34374068_34442808	0/0	c0001	1812	64	10	9	36	1	8	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0002	1812	36	0	7	21	1	7	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0003	1812	26	1	11	7	4	3	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0004	1812	20	0	4	11	1	4	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0005	1812	11	6	2	0	3	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0006	1812	6	6	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	1/0	c0007	1812	6	5	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0008	1812	6	5	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0009	1812	5	5	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0010	1812	4	4	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0011	1812	4	4	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0012	1812	4	0	1	3	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0013	1812	3	0	0	0	2	1	copy fasta	GOLGA8A	chr15	34374068	34442808