JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA8A_chr15_34374068_34442808	0/0	c0014	1812	3	0	1	0	1	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0015	1812	3	0	2	0	1	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0016	1812	3	3	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0017	1812	2	0	0	2	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0018	1812	2	0	0	2	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0019	1812	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0020	1812	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0021	1812	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0022	1812	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0023	1812	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0024	1812	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0025	1812	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0026	1812	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0027	1812	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0028	1812	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0029	1812	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0030	1812	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0031	1812	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0032	1812	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0033	1812	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0034	1812	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0035	1812	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0036	1812	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0037	1812	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0038	1812	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0039	1812	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0040	1812	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0041	1812	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0042	1812	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0043	1812	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0044	1812	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0045	1812	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0046	1812	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0047	1812	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	c0048	1812	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8B_chr15_34520095_34588651	0/1	c0001	1812	84	15	17	39	2	10	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0002	1812	47	10	8	25	0	4	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0003	1812	12	0	6	3	0	3	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0004	1812	10	10	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0005	1812	9	0	0	9	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0006	1812	4	3	0	0	0	1	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0007	1812	4	4	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0008	1812	3	0	2	0	1	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0009	1812	3	0	0	3	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0010	1812	2	0	2	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0011	1812	2	2	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0012	1812	2	2	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0013	1812	2	0	0	1	0	1	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0014	1812	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0015	1812	1	0	0	0	1	0	copy fasta	GOLGA8B	chr15	34520095	34588651