JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA8B_chr15_34520095_34588651	0/0	c0016	1833	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0017	1812	1	1	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0018	1812	1	1	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0019	1812	1	1	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0020	1812	1	0	1	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0021	1812	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0022	1812	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0023	1812	1	0	0	0	0	1	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0024	1812	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0025	1812	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	c0026	1812	1	1	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	1/0	c0027	1812	1	0	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8F_chr15_28373664_28397021	0/0	c0001	1911	77	3	22	28	13	11	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0002	1911	65	14	3	42	0	6	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0003	1911	44	2	7	29	1	5	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0004	1911	12	0	1	11	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0005	1890	10	1	4	1	0	4	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0006	1911	6	0	3	3	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0007	1911	5	0	0	4	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0008	1911	3	3	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0009	1911	3	3	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0010	1911	3	0	0	1	0	2	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0011	1911	3	0	0	3	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0012	1911	2	2	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0013	1911	2	2	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0014	1911	2	2	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0015	1911	2	1	0	0	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0016	1911	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0017	1911	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0018	1911	1	0	0	0	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0019	1911	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0020	1911	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0021	1911	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0022	1911	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0023	1911	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0024	1911	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0025	1911	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0026	1911	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0027	1911	1	0	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0028	1911	1	0	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0029	1911	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0030	1911	1	0	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0031	1911	1	0	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0032	1890	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0033	1890	1	0	0	0	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0034	1890	1	0	0	0	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0035	1911	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0036	1911	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0037	1911	1	0	0	0	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0038	1911	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021