JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA8F_chr15_28373664_28397021	0/0	c0039	1932	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0040	1911	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0041	1911	1	0	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0042	1911	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0043	1911	1	0	0	1	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0044	1911	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0045	1911	1	0	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	c0046	1911	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8G_chr15_28514611_28537971	0/0	c0001	1947	50	5	21	4	11	9	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0002	1947	15	1	3	5	3	3	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0003	1947	4	0	4	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0004	1010	4	4	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0005	1947	3	0	1	0	0	2	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0006	1947	2	2	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0007	1947	2	2	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0008	1947	2	2	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0009	1947	2	0	2	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0010	1947	2	2	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0011	1947	2	0	2	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0012	1947	1	0	1	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0013	1947	1	1	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0014	1947	1	1	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0015	1947	1	0	0	1	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0016	1947	1	0	0	0	1	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0017	1947	1	0	0	0	0	1	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0018	1947	1	0	0	0	0	1	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0019	1947	1	0	0	0	0	1	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0020	1947	1	0	0	0	0	1	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0021	1947	1	0	0	0	1	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0022	1926	1	1	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8G_chr15_28514611_28537971	0/0	c0023	1010	1	1	0	0	0	0	copy fasta	GOLGA8G	chr15	28514611	28537971
GOLGA8H_chr15_30599028_30622752	0/0	c0001	1899	189	11	39	110	6	23	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0002	1899	34	5	13	10	1	5	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0003	1899	24	2	8	6	3	5	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/1	c0004	1899	20	12	2	2	2	1	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0005	1899	15	13	1	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0006	1899	11	10	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0007	1899	9	8	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0008	1899	8	8	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0009	1899	7	4	3	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0010	1899	5	0	1	0	0	4	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0011	1899	5	0	0	3	0	2	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0012	1899	4	0	3	0	1	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0013	1899	4	4	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0014	1899	4	3	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0015	1899	4	0	3	0	0	1	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0016	1899	3	0	0	3	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0017	1899	3	0	2	0	1	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0018	1899	2	2	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0019	1899	2	0	0	2	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752