JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA8H_chr15_30599028_30622752	0/0	c0020	1899	2	0	0	2	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0021	1899	2	0	0	0	0	2	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0022	1899	2	0	0	0	0	2	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0023	1899	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0024	1899	1	0	0	0	0	1	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0025	1899	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0026	1899	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0027	1899	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0028	1899	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0029	1899	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0030	1899	1	0	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0031	1899	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0032	1899	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0033	1899	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0034	1899	1	0	0	0	0	1	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0035	1899	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0036	1899	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0037	1899	1	0	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0038	1899	1	0	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0039	1899	1	0	1	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0040	1899	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0041	1899	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0042	1899	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0043	1899	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0044	1899	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0045	1899	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0046	1899	1	0	0	0	0	1	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0047	1899	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0048	1899	1	0	0	1	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0049	1899	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8H_chr15_30599028_30622752	0/0	c0050	1899	1	1	0	0	0	0	copy fasta	GOLGA8H	chr15	30599028	30622752
GOLGA8J_chr15_30077955_30101690	0/1	c0001	1899	175	4	40	97	7	26	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0002	1899	22	15	6	0	1	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0003	1899	20	5	3	5	0	7	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0004	1899	15	11	1	1	1	1	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0005	1899	13	0	1	12	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0006	1899	9	7	0	2	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0007	1899	7	0	0	7	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0008	1899	7	0	5	0	2	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0009	1899	5	5	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0010	1899	5	3	2	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0011	1899	3	3	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0012	1899	3	0	2	0	1	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0013	1899	3	0	0	3	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0014	1899	3	0	1	0	0	2	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0015	1899	2	2	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0016	1899	2	0	0	2	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0017	1899	2	0	1	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0018	1899	2	0	0	2	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0019	1899	2	2	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690