JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA8J_chr15_30077955_30101690	0/0	c0020	1899	2	0	0	0	0	2	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0021	1896	2	0	2	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0022	1899	2	0	2	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0023	1899	2	1	0	0	0	1	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0024	1899	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0025	1899	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0026	1899	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0027	1899	1	0	1	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0028	1896	1	0	0	0	0	1	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0029	1899	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0030	1899	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0031	1899	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0032	1899	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0033	1899	1	0	1	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0034	1899	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0035	1899	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0036	1899	1	0	1	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0037	1899	1	0	1	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0038	1899	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0039	1899	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0040	1899	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0041	1899	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0042	1899	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0043	1899	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0044	1899	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0045	1899	1	0	0	0	0	1	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0046	1899	1	0	1	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0047	1847	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0048	1899	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0049	1899	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0050	1899	1	0	0	0	0	1	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0051	1899	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0052	1899	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0053	1896	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0054	1899	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0055	1899	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0056	1899	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0057	1899	1	1	0	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0058	1899	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0059	1899	1	0	1	0	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8J_chr15_30077955_30101690	0/0	c0060	1899	1	0	0	1	0	0	copy fasta	GOLGA8J	chr15	30077955	30101690
GOLGA8K_chr15_32384599_32408292	0/0	c0001	1896	106	4	23	71	1	7	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0002	1893	49	2	6	32	1	8	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0003	1896	38	16	2	20	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	1/0	c0004	1893	26	4	9	7	2	3	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0005	1893	22	15	4	1	0	2	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0006	1896	12	0	8	0	0	4	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0007	1896	11	0	1	6	2	2	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0008	1893	9	9	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0009	1896	7	0	0	3	0	4	copy fasta	GOLGA8K	chr15	32384599	32408292