JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA8K_chr15_32384599_32408292	0/0	c0010	1896	7	0	0	7	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0011	1896	6	2	4	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0012	1896	6	4	0	2	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0013	1893	5	1	2	2	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0014	1899	5	0	0	5	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0015	1893	3	0	0	3	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0016	1893	3	0	2	0	0	1	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0017	1893	3	0	0	3	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0018	1893	3	0	0	3	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0019	1896	3	0	0	3	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0020	1896	3	0	0	2	1	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0021	1896	3	0	0	3	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0022	1896	3	1	1	0	1	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0023	1899	3	0	0	3	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0024	1893	2	2	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0025	1893	2	0	0	0	0	2	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0026	1893	2	1	0	0	0	1	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0027	1893	2	0	0	2	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0028	1896	2	0	0	2	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0029	1896	2	0	0	2	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0030	1899	2	2	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0031	1899	2	0	0	0	0	2	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0032	1899	2	0	0	1	0	1	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0033	1896	2	0	0	2	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0034	1896	2	0	2	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0035	1893	2	0	0	2	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0036	1896	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0037	1893	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0038	1893	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0039	1896	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0040	1899	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0041	1893	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0042	1896	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0043	1893	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0044	1893	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0045	1896	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0046	1893	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0047	1893	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0048	1893	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0049	1893	1	0	0	0	1	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0050	1893	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0051	1896	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0052	1896	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0053	1896	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0054	1896	1	0	0	0	0	1	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0055	1896	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0056	1893	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0057	1896	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0058	1896	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0059	1893	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292