JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA8K_chr15_32384599_32408292	0/0	c0060	1896	1	0	0	0	1	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0061	1896	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0062	1893	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0063	1893	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0064	1896	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0065	1896	1	0	0	0	0	1	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0066	1896	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0067	1896	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0068	1899	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0069	1893	1	1	0	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0070	1896	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0071	1896	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0072	1896	1	0	0	0	0	1	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0073	1893	1	0	0	1	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8K_chr15_32384599_32408292	0/0	c0074	1893	1	0	1	0	0	0	copy fasta	GOLGA8K	chr15	32384599	32408292
GOLGA8M_chr15_28693583_28717421	0/0	c0001	1899	85	14	12	33	9	17	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0002	1899	77	1	13	59	0	4	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/1	c0003	1899	54	11	19	16	3	4	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0004	1899	20	0	1	17	0	2	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0005	1899	13	0	0	13	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0006	1899	12	0	6	6	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0007	1899	10	0	0	9	0	1	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0008	1899	9	1	2	3	0	3	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0009	1899	7	5	2	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0010	1899	7	7	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0011	1899	5	5	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0012	1899	5	3	2	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0013	1899	5	0	0	5	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0014	1899	4	0	0	4	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0015	1899	4	4	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0016	1899	4	1	1	1	0	1	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0017	1899	4	4	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0018	1899	3	3	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0019	1899	3	3	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0020	1899	3	2	0	0	1	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0021	1899	3	2	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0022	1899	3	3	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0023	1899	3	3	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0024	1899	3	0	2	0	0	1	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0025	1899	3	0	3	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0026	1899	3	2	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0027	1899	3	2	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0028	1899	2	2	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0029	1899	2	1	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0030	1899	2	0	0	2	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0031	1899	2	2	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0032	1899	2	0	0	2	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0033	1899	2	0	0	2	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0034	1899	2	0	2	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0035	1899	2	0	0	0	0	2	copy fasta	GOLGA8M	chr15	28693583	28717421