Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AIFM1_chrX_130124362_130170841	0/0	c0002	1842	117	42	28	27	5	15	copy fasta	AIFM1	chrX	130124362	130170841
AIFM1_chrX_130124362_130170841	0/0	c0003	1842	8	7	1	0	0	0	copy fasta	AIFM1	chrX	130124362	130170841
AIFM1_chrX_130124362_130170841	0/0	c0004	1842	2	2	0	0	0	0	copy fasta	AIFM1	chrX	130124362	130170841
AIFM1_chrX_130124362_130170841	0/0	c0005	1842	2	2	0	0	0	0	copy fasta	AIFM1	chrX	130124362	130170841
AIFM1_chrX_130124362_130170841	0/0	c0006	1841	1	0	0	1	0	0	copy fasta	AIFM1	chrX	130124362	130170841
AIFM1_chrX_130124362_130170841	0/0	c0007	1843	1	1	0	0	0	0	copy fasta	AIFM1	chrX	130124362	130170841
AIFM1_chrX_130124362_130170841	0/0	c0008	1842	1	1	0	0	0	0	copy fasta	AIFM1	chrX	130124362	130170841
AIFM1_chrX_130124362_130170841	0/0	c0009	1842	1	1	0	0	0	0	copy fasta	AIFM1	chrX	130124362	130170841
AIFM1_chrX_130124362_130170841	0/0	c0010	1841	1	0	0	1	0	0	copy fasta	AIFM1	chrX	130124362	130170841
AIFM2_chr10_70107271_70137825	0/1	c0001	1122	234	36	50	108	14	25	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0002	1122	59	28	2	22	0	7	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0003	1122	41	1	12	26	0	2	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0004	1122	36	0	6	25	0	5	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	1/0	c0005	1122	26	14	4	2	1	4	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0006	1122	23	18	3	0	1	1	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0007	1122	18	0	0	16	0	2	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0008	1122	8	0	0	8	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0009	1122	4	0	0	4	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0010	1122	3	0	0	3	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0011	1122	2	0	1	0	0	1	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0012	1122	2	2	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0013	1122	2	0	1	0	1	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0014	1122	1	0	0	1	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0015	1122	1	0	0	0	0	1	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0016	1122	1	0	0	0	0	1	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0017	1122	1	0	1	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0018	1122	1	0	0	0	0	1	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0019	1122	1	0	1	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0020	1122	1	1	0	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0021	1122	1	0	0	1	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0022	1122	1	0	1	0	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	c0023	1122	1	0	0	0	1	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM3_chr22_20962255_20986358	1/1	c0001	1818	332	56	55	173	14	32	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0002	1818	70	11	17	29	3	10	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0003	1818	12	9	3	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0004	1818	8	8	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0005	1818	6	0	4	0	1	1	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0006	1818	3	3	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0007	1818	3	3	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0008	1818	2	2	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0009	1818	2	0	1	1	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0010	1818	2	0	0	0	0	2	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0011	1818	1	1	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0012	1818	1	0	0	1	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0013	1818	1	0	0	1	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0014	1818	1	1	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0015	1818	1	0	1	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0016	1818	1	0	1	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0017	1818	1	1	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0018	1818	1	1	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358