JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA8M_chr15_28693583_28717421	0/0	c0036	1899	2	1	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0037	1899	2	2	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0038	1899	2	0	0	0	0	2	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0039	1899	2	0	0	2	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0040	1899	2	0	0	2	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0041	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0042	1899	1	0	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0043	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0044	1899	1	0	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0045	1899	1	0	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0046	1899	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0047	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0048	1899	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0049	1899	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0050	1899	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0051	1899	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0052	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0053	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0054	1899	1	0	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0055	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0056	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0057	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0058	1899	1	0	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0059	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0060	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0061	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0062	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0063	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0064	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0065	1899	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0066	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0067	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0068	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0069	1899	1	0	0	0	0	1	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0070	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0071	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0072	1899	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0073	1899	1	0	0	0	1	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0074	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0075	1899	1	0	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0076	1899	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0077	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0078	1899	1	0	0	0	0	1	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0079	1899	1	0	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0080	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0081	1899	1	0	0	0	0	1	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0082	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0083	1899	1	0	1	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0084	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0085	1899	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421