JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA8M_chr15_28693583_28717421	0/0	c0086	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0087	1899	1	0	0	0	1	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0088	1899	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0089	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0090	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0091	1899	1	0	0	0	0	1	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0092	1899	1	0	0	0	0	1	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0093	1899	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0094	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0095	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0096	1899	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0097	1899	1	0	0	1	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0098	1899	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0099	1899	1	0	0	0	1	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8M_chr15_28693583_28717421	0/0	c0100	1899	1	1	0	0	0	0	copy fasta	GOLGA8M	chr15	28693583	28717421
GOLGA8N_chr15_32588456_32612237	0/0	c0001	1899	53	3	9	28	3	10	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0002	1899	50	3	15	25	1	6	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0003	1899	34	7	12	9	1	5	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0004	1899	20	7	5	4	0	4	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0005	1899	12	2	0	6	1	3	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0006	1899	11	11	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0007	1899	8	0	1	6	1	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0008	1896	8	6	2	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0009	1899	5	5	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0010	1899	5	3	0	0	2	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0011	1899	4	2	0	0	0	2	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0012	1899	4	4	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0013	1899	4	0	1	2	1	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0014	1899	3	0	1	0	0	2	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0015	1899	3	2	1	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0016	1899	3	0	1	1	0	1	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0017	1899	2	0	2	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0018	1899	2	0	0	2	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0019	1899	2	0	1	0	0	1	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0020	1899	2	0	0	2	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0021	1899	2	1	0	0	1	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0022	1896	2	0	0	0	2	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0023	1899	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0024	1899	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0025	1899	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0026	1899	2	1	0	0	0	1	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0027	1899	2	0	0	2	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0028	1899	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0029	1899	2	0	0	2	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0030	1896	2	2	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0031	1899	1	0	0	1	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0032	1899	1	0	0	0	1	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0033	1899	1	0	1	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0034	1899	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237
GOLGA8N_chr15_32588456_32612237	0/0	c0035	1899	1	1	0	0	0	0	copy fasta	GOLGA8N	chr15	32588456	32612237