JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA8O_chr15_32436914_32460634	0/0	c0025	1899	2	0	2	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0026	1899	1	0	0	0	1	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0027	1899	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0028	1899	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0029	1899	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0030	1899	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0031	1899	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0032	1899	1	0	0	0	1	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0033	1896	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0034	1899	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0035	1899	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0036	1899	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0037	1899	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0038	1899	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0039	1899	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0040	1899	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0041	1899	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0042	1899	1	0	0	0	0	1	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0043	1899	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0044	1899	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0045	1899	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0046	1899	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0047	1899	1	0	0	0	0	1	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0048	1899	1	0	1	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0049	1899	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0050	1896	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0051	1934	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0052	1899	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0053	1899	1	1	0	0	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8O_chr15_32436914_32460634	0/0	c0054	1899	1	0	0	1	0	0	copy fasta	GOLGA8O	chr15	32436914	32460634
GOLGA8Q_chr15_30547050_30570684	0/0	c0001	1899	71	6	16	45	0	4	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0002	1896	10	5	2	3	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0003	1899	8	0	0	8	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0004	1896	8	7	0	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0005	1899	4	3	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0006	1899	3	0	0	3	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0007	1899	3	2	0	0	0	1	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0008	1896	2	2	0	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0009	1896	2	0	1	0	0	1	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0010	1899	2	2	0	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0011	1899	2	0	1	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0012	1896	1	0	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0013	1896	1	0	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0014	1896	1	0	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0015	1899	1	0	0	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0016	1899	1	0	0	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0017	1899	1	0	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0018	1899	1	0	0	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0019	1896	1	0	0	1	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684
GOLGA8Q_chr15_30547050_30570684	0/0	c0020	1899	1	0	1	0	0	0	copy fasta	GOLGA8Q	chr15	30547050	30570684