JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA8S_chr15_23349748_23373341	0/0	c0007	1917	7	0	7	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0008	1917	6	5	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0009	1917	6	0	0	6	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0010	1914	5	0	2	0	0	3	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0011	1917	5	3	0	0	0	2	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0012	1917	5	0	2	0	2	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0013	1917	5	1	0	0	1	3	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0014	1917	4	0	0	2	2	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0015	1917	4	0	0	2	1	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0016	1917	4	0	1	0	1	2	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0017	1917	4	0	0	3	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0018	1938	3	3	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0019	1917	3	0	0	3	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0020	1917	3	0	0	2	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0021	1917	3	2	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0022	1917	3	2	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0023	1917	3	3	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0024	1938	2	0	2	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0025	1938	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0026	1917	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0027	1917	2	0	0	2	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0028	1917	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0029	1917	2	0	1	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0030	1917	2	0	0	2	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0031	1917	2	1	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0032	1917	2	1	0	0	1	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0033	1917	2	0	0	2	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0034	1917	2	0	2	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0035	1917	2	0	1	0	1	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0036	1917	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0037	1917	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0038	1917	2	0	0	2	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0039	1917	2	1	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0040	1917	2	0	0	2	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0041	1938	2	2	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0042	1917	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0043	1917	1	0	0	0	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0044	1917	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0045	1917	1	0	0	1	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0046	1938	1	0	0	0	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0047	1917	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0048	1938	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0049	1938	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0050	1917	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0051	1914	1	0	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0052	1917	1	1	0	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0053	1917	1	0	0	0	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0054	1917	1	0	1	0	0	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0055	1917	1	0	0	0	1	0	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8S_chr15_23349748_23373341	0/0	c0056	1917	1	0	0	0	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341