JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA8S_chr15_23349748_23373341	0/0	c0107	1917	1	0	0	0	0	1	copy fasta	GOLGA8S	chr15	23349748	23373341
GOLGA8T_chr15_30130051_30153748	0/1	c0001	1896	132	1	25	81	8	16	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0002	1896	23	0	3	19	0	1	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0003	1896	13	0	8	3	1	1	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0004	1896	13	0	3	8	0	2	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0005	1899	12	0	3	5	0	4	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0006	1896	10	2	3	5	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0007	1896	10	2	4	3	0	1	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0008	1899	7	0	0	7	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0009	1896	6	5	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0010	1896	5	5	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0011	1896	3	0	1	0	0	2	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0012	1896	3	3	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0013	1896	3	0	0	0	0	3	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0014	1896	3	0	0	3	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0015	1893	2	0	0	0	0	2	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0016	1896	2	0	2	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0017	1896	2	0	0	2	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0018	1896	2	2	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0019	1899	2	2	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0020	1896	2	0	1	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0021	1896	2	0	2	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0022	1896	2	2	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0023	1899	2	0	0	0	0	2	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0024	1899	2	2	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0025	1896	2	0	0	2	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0026	1896	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0027	1896	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0028	1896	1	0	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0029	1896	1	0	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0030	1896	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0031	1896	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0032	1896	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0033	1896	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0034	1896	1	0	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0035	1896	1	0	0	0	1	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0036	1896	1	0	0	0	0	1	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0037	1896	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0038	1896	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0039	1893	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0040	1896	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0041	1893	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0042	1896	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0043	1896	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0044	1896	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0045	1896	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0046	1893	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0047	1896	1	0	1	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0048	1899	1	0	0	0	0	1	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0049	1899	1	1	0	0	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748