JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLGA8T_chr15_30130051_30153748	0/0	c0050	1896	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGA8T_chr15_30130051_30153748	0/0	c0051	1896	1	0	0	1	0	0	copy fasta	GOLGA8T	chr15	30130051	30153748
GOLGB1_chr3_121658201_121754741	0/0	c0001	9795	71	11	11	44	0	5	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	1/0	c0002	9795	65	22	16	20	3	3	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0003	9795	54	2	1	47	0	4	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/1	c0004	9795	38	5	10	13	4	5	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0005	9795	37	15	2	14	0	6	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0006	9795	33	1	17	5	6	4	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0007	9795	7	0	2	0	0	5	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0008	9795	6	6	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0009	9795	6	6	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0010	9792	6	5	1	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0011	9795	4	0	0	4	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0012	9795	4	0	0	4	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0013	9795	3	3	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0014	9795	3	2	1	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0015	9795	2	0	2	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0016	9795	2	0	2	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0017	9795	2	0	0	0	0	2	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0018	9795	1	0	0	0	0	1	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0019	9795	1	0	0	1	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0020	9795	1	0	0	0	1	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0021	9795	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0022	9795	1	0	1	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0023	9795	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0024	9795	1	0	1	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0025	9795	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0026	9795	1	0	0	0	0	1	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0027	9795	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0028	9795	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0029	9795	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0030	9795	1	0	0	1	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0031	9795	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0032	9795	1	0	1	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0033	9795	1	0	1	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0034	9795	1	0	0	1	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0035	9795	1	0	0	1	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0036	9795	1	0	0	0	0	1	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0037	9795	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0038	9795	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0039	9795	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0040	9795	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0041	9795	1	0	1	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0042	9795	1	0	0	0	0	1	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0043	9795	1	0	0	1	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLGB1_chr3_121658201_121754741	0/0	c0044	9795	1	1	0	0	0	0	copy fasta	GOLGB1	chr3	121658201	121754741
GOLIM4_chr3_168003689_168100924	1/1	c0001	2091	183	59	46	35	13	28	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	c0002	2091	21	20	1	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	c0003	2091	8	0	0	6	0	2	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	c0004	2091	6	6	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924