JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOLIM4_chr3_168003689_168100924	0/0	c0005	2091	3	0	3	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	c0006	2091	3	0	1	2	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	c0007	2091	1	0	1	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	c0008	2091	1	0	0	1	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	c0009	2091	1	0	0	0	1	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLIM4_chr3_168003689_168100924	0/0	c0010	2091	1	1	0	0	0	0	copy fasta	GOLIM4	chr3	168003689	168100924
GOLM1_chr9_86021146_86104558	1/0	c0001	1206	115	21	36	23	11	23	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	c0002	1206	56	8	4	39	0	5	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	c0003	1206	45	0	4	37	0	4	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/1	c0004	1206	44	23	9	6	0	5	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	c0005	1206	14	12	2	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	c0006	1206	12	10	1	1	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	c0007	1206	11	0	0	11	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	c0008	1206	9	9	0	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	c0009	1206	2	2	0	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	c0010	1206	1	1	0	0	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	c0011	1206	1	0	0	1	0	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	c0012	1206	1	0	0	0	0	1	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	c0013	1206	1	0	0	0	1	0	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	c0014	1206	1	0	0	0	0	1	copy fasta	GOLM1	chr9	86021146	86104558
GOLM1_chr9_86021146_86104558	0/0	c0015	1206	1	0	0	0	0	1	copy fasta	GOLM1	chr9	86021146	86104558
GOLM2_chr15_44283719_44420758	1/1	c0001	1311	131	44	17	54	6	8	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	c0002	1311	11	10	1	0	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	c0003	1311	3	3	0	0	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	c0004	1308	2	0	0	2	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	c0005	1311	2	2	0	0	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLM2_chr15_44283719_44420758	0/0	c0006	1311	1	1	0	0	0	0	copy fasta	GOLM2	chr15	44283719	44420758
GOLPH3L_chr1_150641230_150702154	1/1	c0001	858	344	94	53	144	16	35	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	c0002	858	2	0	0	1	0	1	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	c0003	858	1	0	1	0	0	0	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3L_chr1_150641230_150702154	0/0	c0004	858	1	0	0	1	0	0	copy fasta	GOLPH3L	chr1	150641230	150702154
GOLPH3_chr5_32119716_32179319	1/1	c0001	897	362	71	69	168	8	44	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	c0002	897	15	15	0	0	0	0	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	c0003	897	1	0	0	1	0	0	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	c0004	897	1	0	0	1	0	0	copy fasta	GOLPH3	chr5	32119716	32179319
GOLPH3_chr5_32119716_32179319	0/0	c0005	897	1	0	1	0	0	0	copy fasta	GOLPH3	chr5	32119716	32179319
GOLT1A_chr1_204193163_204218988	1/1	c0001	399	373	77	76	170	11	37	copy fasta	GOLT1A	chr1	204193163	204218988
GOLT1A_chr1_204193163_204218988	0/0	c0002	399	30	22	4	1	0	3	copy fasta	GOLT1A	chr1	204193163	204218988
GOLT1A_chr1_204193163_204218988	0/0	c0003	399	8	0	0	8	0	0	copy fasta	GOLT1A	chr1	204193163	204218988
GOLT1A_chr1_204193163_204218988	0/0	c0004	399	1	0	0	0	1	0	copy fasta	GOLT1A	chr1	204193163	204218988
GOLT1A_chr1_204193163_204218988	0/0	c0005	399	1	0	0	1	0	0	copy fasta	GOLT1A	chr1	204193163	204218988
GOLT1A_chr1_204193163_204218988	0/0	c0006	399	1	1	0	0	0	0	copy fasta	GOLT1A	chr1	204193163	204218988
GOLT1B_chr12_21496789_21523408	1/1	c0001	417	427	91	68	198	18	50	copy fasta	GOLT1B	chr12	21496789	21523408
GOLT1B_chr12_21496789_21523408	0/0	c0002	417	3	3	0	0	0	0	copy fasta	GOLT1B	chr12	21496789	21523408
GON4L_chr1_155744659_155862214	1/1	c0001	6726	118	53	21	28	3	11	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0002	6726	59	8	13	23	2	13	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0003	6726	6	6	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0004	6726	6	6	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0005	6726	5	0	0	4	1	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0006	6726	4	3	1	0	0	0	copy fasta	GON4L	chr1	155744659	155862214