Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AIFM3_chr22_20962255_20986358	0/0	c0019	1818	1	0	0	1	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0020	1818	1	1	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0021	1818	1	0	0	0	0	1	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0022	1818	1	1	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0023	1818	1	1	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0024	1818	1	0	0	1	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0025	1818	1	0	0	1	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	c0026	1818	1	1	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIG1_chr6_143055889_143346058	1/1	c0001	717	121	53	15	38	1	12	copy fasta	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	c0002	717	76	21	5	43	1	6	copy fasta	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	c0003	717	3	3	0	0	0	0	copy fasta	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	c0004	717	2	2	0	0	0	0	copy fasta	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	c0005	717	1	1	0	0	0	0	copy fasta	AIG1	chr6	143055889	143346058
AIG1_chr6_143055889_143346058	0/0	c0006	717	1	0	0	1	0	0	copy fasta	AIG1	chr6	143055889	143346058
AIM2_chr1_159057484_159081766	1/1	c0001	1032	357	77	57	167	14	40	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	c0002	1032	22	4	1	17	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	c0003	1032	4	4	0	0	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	c0004	1032	3	3	0	0	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	c0005	1032	2	2	0	0	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	c0006	1032	1	1	0	0	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	c0007	995	1	0	0	1	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	c0008	1032	1	0	0	1	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	c0009	1032	1	1	0	0	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	c0010	1032	1	0	0	1	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	c0011	1032	1	0	0	1	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIMP1_chr4_106311550_106354456	1/1	c0001	939	292	71	55	119	12	33	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	c0002	939	76	0	14	57	0	5	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	c0003	939	7	7	0	0	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	c0004	939	4	4	0	0	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	c0005	939	3	0	1	0	2	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	c0006	939	2	2	0	0	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP2_chr7_6004272_6028834	1/1	c0001	963	277	69	48	117	6	35	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	c0002	963	147	16	30	81	11	9	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	c0003	963	11	10	1	0	0	0	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	c0004	963	1	0	0	0	0	1	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	c0005	963	1	0	0	0	0	1	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	c0006	963	1	0	0	1	0	0	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	c0007	982	1	0	0	0	1	0	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	c0008	963	1	0	1	0	0	0	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	c0009	963	1	1	0	0	0	0	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	c0010	963	1	0	0	1	0	0	copy fasta	AIMP2	chr7	6004272	6028834
AIPL1_chr17_6418738_6440121	1/0	c0001	1155	137	34	18	70	2	12	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/1	c0002	1155	121	21	38	32	6	23	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	c0003	1155	115	5	23	70	8	9	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	c0004	1155	63	24	6	29	2	2	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	c0005	1155	4	4	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	c0006	1155	2	2	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	c0007	1155	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	c0008	1155	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	c0009	1155	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121