JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GON4L_chr1_155744659_155862214	0/0	c0007	6726	2	2	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0008	6726	2	0	0	0	0	2	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0009	6726	1	1	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0010	6726	1	0	0	1	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0011	6726	1	1	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0012	6726	1	0	1	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0013	6726	1	1	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0014	6726	1	0	0	1	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0015	6726	1	0	1	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0016	6726	1	0	0	1	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0017	6726	1	1	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0018	6726	1	0	0	1	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0019	6726	1	0	1	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0020	6726	1	0	0	1	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0021	6726	1	0	0	1	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0022	6726	1	1	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0023	6726	1	1	0	0	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON4L_chr1_155744659_155862214	0/0	c0024	6726	1	0	0	1	0	0	copy fasta	GON4L	chr1	155744659	155862214
GON7_chr14_93197894_93212065	0/1	c0001	303	411	92	78	176	18	46	copy fasta	GON7	chr14	93197894	93212065
GON7_chr14_93197894_93212065	0/0	c0002	303	1	1	0	0	0	0	copy fasta	GON7	chr14	93197894	93212065
GON7_chr14_93197894_93212065	0/0	c0003	303	1	1	0	0	0	0	copy fasta	GON7	chr14	93197894	93212065
GOPC_chr6_117555269_117607511	1/1	c0001	1389	370	82	64	176	15	31	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	c0002	1386	7	7	0	0	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	c0003	1389	2	0	0	0	1	1	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	c0004	1389	1	0	0	1	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	c0005	1389	1	1	0	0	0	0	copy fasta	GOPC	chr6	117555269	117607511
GOPC_chr6_117555269_117607511	0/0	c0006	1389	1	0	0	1	0	0	copy fasta	GOPC	chr6	117555269	117607511
GORAB_chr1_170527166_170558834	0/0	c0001	1110	231	44	36	123	5	23	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/1	c0002	1110	86	17	27	18	5	18	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	1/0	c0003	1110	21	19	1	0	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	c0004	1110	6	5	1	0	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	c0005	1110	4	4	0	0	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	c0006	1110	2	2	0	0	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	c0007	1110	2	0	0	0	2	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	c0008	1110	1	1	0	0	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	c0009	1110	1	0	1	0	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	c0010	1110	1	0	0	0	0	1	copy fasta	GORAB	chr1	170527166	170558834
GORAB_chr1_170527166_170558834	0/0	c0011	1110	1	0	0	1	0	0	copy fasta	GORAB	chr1	170527166	170558834
GORASP1_chr3_39091599_39112627	1/1	c0001	1323	338	66	67	157	16	30	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	c0002	1323	45	12	2	30	0	1	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	c0003	1323	16	15	1	0	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	c0004	1323	2	2	0	0	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	c0005	1323	2	1	1	0	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	c0006	1323	1	0	0	0	0	1	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	c0007	1323	1	0	0	1	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	c0008	1323	1	0	0	1	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	c0009	1323	1	0	0	1	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP1_chr3_39091599_39112627	0/0	c0010	1323	1	0	1	0	0	0	copy fasta	GORASP1	chr3	39091599	39112627
GORASP2_chr2_170924253_170972130	0/1	c0001	1359	253	45	51	107	15	34	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	c0002	1359	68	0	9	53	0	6	copy fasta	GORASP2	chr2	170924253	170972130