JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GORASP2_chr2_170924253_170972130	1/0	c0003	1359	46	38	4	0	1	2	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	c0004	1359	8	6	2	0	0	0	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	c0005	1359	2	0	0	2	0	0	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	c0006	1359	1	1	0	0	0	0	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	c0007	1359	1	0	0	1	0	0	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	c0008	1359	1	1	0	0	0	0	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	c0009	1359	1	1	0	0	0	0	copy fasta	GORASP2	chr2	170924253	170972130
GORASP2_chr2_170924253_170972130	0/0	c0010	1359	1	0	0	1	0	0	copy fasta	GORASP2	chr2	170924253	170972130
GOSR1_chr17_30472408_30532592	1/1	c0001	747	304	86	66	100	14	36	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	c0002	747	1	0	0	1	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR1_chr17_30472408_30532592	0/0	c0003	747	1	0	0	1	0	0	copy fasta	GOSR1	chr17	30472408	30532592
GOSR2_chr17_46918160_46947020	1/0	c0001	639	248	53	55	108	7	24	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/1	c0002	639	157	38	24	72	7	15	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	c0003	639	3	0	2	0	0	1	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	c0004	639	1	1	0	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	c0005	639	1	0	0	1	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	c0006	639	1	0	1	0	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOSR2_chr17_46918160_46947020	0/0	c0007	639	1	0	0	1	0	0	copy fasta	GOSR2	chr17	46918160	46947020
GOT1L1_chr8_37929281_37945124	1/1	c0001	1266	383	56	71	198	14	42	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	c0002	1266	22	22	0	0	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	c0003	1265	9	0	0	9	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	c0004	1266	4	4	0	0	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	c0005	1266	3	3	0	0	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	c0006	1266	2	2	0	0	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	c0007	1266	2	0	1	0	0	1	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	c0008	1266	1	0	0	1	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	c0009	1266	1	0	0	1	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	c0010	1266	1	0	0	1	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	c0011	1266	1	1	0	0	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	c0012	1266	1	0	1	0	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	c0013	1266	1	0	0	0	0	1	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	c0014	1266	1	1	0	0	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	c0015	1266	1	1	0	0	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1L1_chr8_37929281_37945124	0/0	c0016	1266	1	0	1	0	0	0	copy fasta	GOT1L1	chr8	37929281	37945124
GOT1_chr10_99391870_99435624	1/1	c0001	1242	312	90	50	140	8	22	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	c0002	1242	33	1	12	19	0	1	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	c0003	1242	4	0	1	3	0	0	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	c0004	1242	2	0	0	2	0	0	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	c0005	1242	1	0	1	0	0	0	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	c0006	1242	1	0	0	0	0	1	copy fasta	GOT1	chr10	99391870	99435624
GOT1_chr10_99391870_99435624	0/0	c0007	1242	1	1	0	0	0	0	copy fasta	GOT1	chr10	99391870	99435624
GOT2_chr16_58702131_58739316	0/0	c0001	1293	227	55	43	104	4	21	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	1/1	c0002	1293	102	11	14	62	5	8	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	c0003	1293	17	4	7	1	2	3	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	c0004	1293	12	0	0	11	0	1	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	c0005	1293	12	12	0	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	c0006	1293	7	3	3	1	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	c0007	1293	6	6	0	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	c0008	1293	5	0	0	1	0	4	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	c0009	1293	3	0	1	0	0	2	copy fasta	GOT2	chr16	58702131	58739316