JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GOT2_chr16_58702131_58739316	0/0	c0010	1293	2	0	0	2	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	c0011	1293	2	0	0	0	1	1	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	c0012	1317	1	1	0	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	c0013	1293	1	0	0	1	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	c0014	1293	1	1	0	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	c0015	1293	1	1	0	0	0	0	copy fasta	GOT2	chr16	58702131	58739316
GOT2_chr16_58702131_58739316	0/0	c0016	1293	1	0	0	1	0	0	copy fasta	GOT2	chr16	58702131	58739316
GP1BA_chr17_4927277_4940023	0/1	c0001	1920	155	46	35	45	9	19	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0002	1881	66	4	3	48	1	10	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0003	1920	57	3	10	31	3	10	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0004	1920	48	0	4	41	0	3	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0005	1959	45	19	15	8	1	2	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0006	1998	15	0	0	15	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0007	1881	8	0	0	8	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0008	1959	7	5	2	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0009	1959	3	3	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0010	1881	2	2	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0011	1842	2	0	2	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0012	1998	2	0	0	2	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0013	1920	2	2	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0014	1920	1	0	1	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0015	1959	1	1	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	1/0	c0016	1959	1	0	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0017	1880	1	0	0	1	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0018	1920	1	0	0	1	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0019	1959	1	1	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0020	1920	1	0	1	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0021	1959	1	0	1	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0022	1959	1	1	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0023	1959	1	1	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0024	1920	1	1	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BA_chr17_4927277_4940023	0/0	c0025	1920	1	1	0	0	0	0	copy fasta	GP1BA	chr17	4927277	4940023
GP1BB_chr22_19718539_19729771	1/1	c0001	621	403	92	80	169	18	42	copy fasta	GP1BB	chr22	19718539	19729771
GP1BB_chr22_19718539_19729771	0/0	c0002	621	2	0	0	0	0	2	copy fasta	GP1BB	chr22	19718539	19729771
GP1BB_chr22_19718539_19729771	0/0	c0003	621	1	0	1	0	0	0	copy fasta	GP1BB	chr22	19718539	19729771
GP1BB_chr22_19718539_19729771	0/0	c0004	614	1	1	0	0	0	0	copy fasta	GP1BB	chr22	19718539	19729771
GP1BB_chr22_19718539_19729771	0/0	c0005	621	1	1	0	0	0	0	copy fasta	GP1BB	chr22	19718539	19729771
GP1BB_chr22_19718539_19729771	0/0	c0006	621	1	0	1	0	0	0	copy fasta	GP1BB	chr22	19718539	19729771
GP1BB_chr22_19718539_19729771	0/0	c0007	621	1	0	0	1	0	0	copy fasta	GP1BB	chr22	19718539	19729771
GP2_chr16_20304574_20332513	1/1	c0001	1605	256	52	50	120	5	27	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0002	1605	55	5	10	20	7	13	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0003	1605	20	2	11	0	5	2	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0004	1605	18	0	0	15	0	3	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0005	1605	16	14	2	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0006	1605	6	5	1	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0007	1605	6	6	0	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0008	1605	2	0	0	2	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0009	1605	2	1	1	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0010	1605	1	0	0	0	0	1	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0011	1605	1	1	0	0	0	0	copy fasta	GP2	chr16	20304574	20332513