JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GP2_chr16_20304574_20332513	0/0	c0012	1605	1	0	0	1	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0013	1605	1	0	1	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0014	1605	1	1	0	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0015	1605	1	0	1	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0016	1605	1	0	0	1	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0017	1605	1	0	0	0	1	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0018	1605	1	0	0	1	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0019	1605	1	0	1	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	c0020	1605	1	1	0	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP5_chr3_194389821_194404266	0/1	c0001	1683	286	55	49	145	3	33	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	c0002	1683	40	17	5	17	0	1	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	c0003	1683	16	2	0	14	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	c0004	1683	13	13	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	c0005	1683	7	0	2	2	0	3	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	c0006	1683	7	7	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	c0007	1683	3	0	2	0	1	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	c0008	1683	2	2	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	c0009	1683	2	2	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	1/0	c0010	1683	1	0	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	c0011	1683	1	0	1	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	c0012	1683	1	0	0	1	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	c0013	1683	1	1	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	c0014	1683	1	0	0	1	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	c0015	1683	1	0	0	0	0	1	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	c0016	1683	1	1	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	c0017	1683	1	0	1	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP6_chr19_55008705_55043264	0/1	c0001	1863	151	26	15	90	5	14	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0002	1863	86	4	31	33	6	12	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0003	1867	52	3	8	37	0	4	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0004	1863	30	3	6	12	4	5	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0005	1863	25	3	7	4	3	8	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0006	1863	18	6	5	5	0	2	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0007	1863	14	12	2	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0008	1863	7	6	1	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0009	1863	6	6	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0010	1863	5	5	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0011	1863	4	1	2	0	0	1	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0012	1863	4	4	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0013	1863	4	4	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0014	1863	3	3	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0015	1863	3	3	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0016	1867	3	3	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0017	1863	2	0	2	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0018	1863	2	0	2	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0019	1867	2	0	0	2	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0020	1863	1	0	0	1	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0021	1863	1	0	0	0	0	1	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0022	1863	1	0	1	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0023	1863	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0024	1863	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264