JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GP6_chr19_55008705_55043264	0/0	c0025	1863	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0026	1863	1	0	0	1	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0027	1863	1	0	0	1	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0028	1863	1	0	0	1	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0029	1863	1	0	0	1	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0030	1863	1	0	0	1	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0031	1863	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0032	1863	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0033	1863	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0034	1863	1	0	0	1	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0035	1863	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0036	1867	1	0	1	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0037	1863	1	0	0	0	0	1	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0038	1863	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	c0039	1863	1	0	1	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP9_chr3_129055779_129067406	1/1	c0001	534	306	78	69	110	12	35	copy fasta	GP9	chr3	129055779	129067406
GP9_chr3_129055779_129067406	0/0	c0002	534	48	0	5	40	0	3	copy fasta	GP9	chr3	129055779	129067406
GP9_chr3_129055779_129067406	0/0	c0003	534	29	8	2	15	0	4	copy fasta	GP9	chr3	129055779	129067406
GP9_chr3_129055779_129067406	0/0	c0004	534	4	0	0	4	0	0	copy fasta	GP9	chr3	129055779	129067406
GP9_chr3_129055779_129067406	0/0	c0005	534	2	0	0	2	0	0	copy fasta	GP9	chr3	129055779	129067406
GP9_chr3_129055779_129067406	0/0	c0006	534	1	0	1	0	0	0	copy fasta	GP9	chr3	129055779	129067406
GP9_chr3_129055779_129067406	0/0	c0007	534	1	0	1	0	0	0	copy fasta	GP9	chr3	129055779	129067406
GP9_chr3_129055779_129067406	0/0	c0008	534	1	0	0	1	0	0	copy fasta	GP9	chr3	129055779	129067406
GPA33_chr1_167047836_167095377	1/1	c0001	960	311	82	66	109	14	38	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	c0002	960	43	1	8	30	2	2	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	c0003	960	11	11	0	0	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	c0004	960	1	0	0	0	0	1	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	c0005	960	1	1	0	0	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	c0006	960	1	1	0	0	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	c0007	960	1	0	0	1	0	0	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	c0008	960	1	0	0	0	0	1	copy fasta	GPA33	chr1	167047836	167095377
GPAA1_chr8_144077634_144091216	1/1	c0001	1866	278	55	63	108	15	35	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	c0002	1866	35	26	7	0	1	1	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	c0003	1866	8	8	0	0	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	c0004	1866	3	2	0	0	0	1	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	c0005	1866	2	2	0	0	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	c0006	1866	2	2	0	0	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	c0007	1866	1	1	0	0	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	c0008	1866	1	0	0	1	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	c0009	1866	1	0	0	1	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	c0010	1866	1	0	1	0	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	c0011	1866	1	0	0	0	0	1	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	c0012	1866	1	0	0	1	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	c0013	1866	1	0	0	1	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	c0014	1866	1	0	1	0	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	c0015	1866	1	0	0	1	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPAA1_chr8_144077634_144091216	0/0	c0016	1866	1	0	0	1	0	0	copy fasta	GPAA1	chr8	144077634	144091216
GPALPP1_chr13_44984538_45035305	1/0	c0001	1023	341	87	59	155	8	31	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	c0002	1023	2	0	2	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	c0003	1023	1	0	0	1	0	0	copy fasta	GPALPP1	chr13	44984538	45035305