JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPALPP1_chr13_44984538_45035305	0/1	c0004	1023	1	0	0	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	c0005	1023	1	0	0	0	0	1	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	c0006	1023	1	0	1	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPALPP1_chr13_44984538_45035305	0/0	c0007	1023	1	1	0	0	0	0	copy fasta	GPALPP1	chr13	44984538	45035305
GPAM_chr10_112144865_112188765	0/1	c0001	2487	180	34	29	91	9	16	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	1/0	c0002	2487	91	3	34	37	6	10	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	c0003	2487	74	14	11	37	3	9	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	c0004	2487	16	15	1	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	c0005	2487	4	0	0	4	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	c0006	2487	4	1	1	0	0	2	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	c0007	2487	4	3	1	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	c0008	2487	1	1	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	c0009	2487	1	0	1	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	c0010	2487	1	1	0	0	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	c0011	2487	1	0	0	0	0	1	copy fasta	GPAM	chr10	112144865	112188765
GPAM_chr10_112144865_112188765	0/0	c0012	2487	1	0	0	1	0	0	copy fasta	GPAM	chr10	112144865	112188765
GPANK1_chr6_31656228_31669997	0/1	c0001	1071	181	24	38	82	10	26	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	c0002	1071	110	22	24	58	2	4	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	c0003	1071	42	1	4	29	1	7	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	c0004	1071	37	16	5	5	3	8	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	c0005	1071	23	7	2	13	0	1	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	c0006	1071	9	9	0	0	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	c0007	1071	8	1	1	6	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	c0008	1071	7	2	3	0	2	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	c0009	1071	4	4	0	0	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	c0010	1071	3	3	0	0	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	c0011	1071	3	3	0	0	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	c0012	1071	2	0	0	2	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	c0013	1071	1	0	0	1	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	c0014	1071	1	0	0	1	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	c0015	1071	1	0	0	1	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPANK1_chr6_31656228_31669997	0/0	c0016	1071	1	0	1	0	0	0	copy fasta	GPANK1	chr6	31656228	31669997
GPAT2_chr2_96016946_96039916	1/0	c0001	2406	306	57	52	148	8	40	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/1	c0002	2406	49	28	7	8	4	1	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	c0003	2406	42	7	6	29	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	c0004	2406	7	1	5	0	0	1	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	c0005	2406	3	0	0	3	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	c0006	2406	2	0	0	0	0	2	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	c0007	2406	2	0	2	0	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	c0008	2406	2	0	0	2	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	c0009	2406	1	1	0	0	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	c0010	2406	1	1	0	0	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	c0011	2406	1	1	0	0	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	c0012	2406	1	0	0	1	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	c0013	2406	1	0	1	0	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	c0014	2406	1	0	0	1	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	c0015	2406	1	0	1	0	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	c0016	2406	1	0	1	0	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT2_chr2_96016946_96039916	0/0	c0017	2406	1	0	1	0	0	0	copy fasta	GPAT2	chr2	96016946	96039916
GPAT3_chr4_83531108_83610875	1/1	c0001	1305	326	91	45	140	11	37	copy fasta	GPAT3	chr4	83531108	83610875