JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPAT3_chr4_83531108_83610875	0/0	c0002	1305	5	0	3	0	1	1	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	c0003	1305	2	0	2	0	0	0	copy fasta	GPAT3	chr4	83531108	83610875
GPAT3_chr4_83531108_83610875	0/0	c0004	1305	1	1	0	0	0	0	copy fasta	GPAT3	chr4	83531108	83610875
GPAT4_chr8_41573200_41630001	1/1	c0001	1371	405	86	62	196	12	47	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	c0002	1371	2	2	0	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	c0003	1371	2	0	2	0	0	0	copy fasta	GPAT4	chr8	41573200	41630001
GPAT4_chr8_41573200_41630001	0/0	c0004	1371	1	0	0	0	0	1	copy fasta	GPAT4	chr8	41573200	41630001
GPATCH11_chr2_37079518_37104244	1/1	c0001	792	424	89	75	202	16	40	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	c0002	792	4	0	0	0	2	2	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	c0003	792	2	2	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	c0004	792	1	1	0	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	c0005	792	1	0	0	1	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	c0006	792	1	0	0	1	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH11_chr2_37079518_37104244	0/0	c0007	792	1	0	1	0	0	0	copy fasta	GPATCH11	chr2	37079518	37104244
GPATCH1_chr19_33076181_33135542	0/0	c0001	2796	92	11	12	57	2	10	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0002	2796	72	14	20	32	5	1	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0003	2796	57	30	5	6	2	14	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0004	2796	53	0	4	49	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	1/1	c0005	2796	36	2	14	0	7	11	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0006	2796	20	1	2	15	0	2	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0007	2796	16	16	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0008	2796	7	7	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0009	2796	4	2	1	1	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0010	2796	4	4	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0011	2796	3	3	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0012	2796	3	0	0	3	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0013	2796	1	1	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0014	2796	1	0	1	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0015	2796	1	1	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0016	2796	1	1	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0017	2796	1	1	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0018	2796	1	0	0	1	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0019	2796	1	0	0	1	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0020	2796	1	1	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0021	2796	1	1	0	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0022	2796	1	0	0	0	0	1	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0023	2796	1	0	1	0	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0024	2796	1	0	0	1	0	0	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH1_chr19_33076181_33135542	0/0	c0025	2796	1	0	0	0	0	1	copy fasta	GPATCH1	chr19	33076181	33135542
GPATCH2L_chr14_76146922_76219343	1/1	c0001	1449	375	67	64	189	12	41	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	c0002	1449	12	0	0	12	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	c0003	1449	4	4	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	c0004	1449	4	0	3	1	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	c0005	1449	3	3	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	c0006	1449	1	1	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	c0007	1449	1	1	0	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	c0008	1449	1	0	1	0	0	0	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2L_chr14_76146922_76219343	0/0	c0009	1449	1	0	0	0	0	1	copy fasta	GPATCH2L	chr14	76146922	76219343
GPATCH2_chr1_217421992_217636090	1/1	c0001	1587	166	66	34	36	6	22	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	c0002	1587	10	0	1	5	0	4	copy fasta	GPATCH2	chr1	217421992	217636090