JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPATCH2_chr1_217421992_217636090	0/0	c0003	1587	5	5	0	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	c0004	1587	3	0	3	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	c0005	1587	2	1	1	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	c0006	1587	1	0	0	1	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH2_chr1_217421992_217636090	0/0	c0007	1587	1	0	1	0	0	0	copy fasta	GPATCH2	chr1	217421992	217636090
GPATCH3_chr1_26885488_26905467	1/1	c0001	1578	286	91	61	75	18	39	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	c0002	1578	1	0	0	0	0	1	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	c0003	1578	1	0	0	1	0	0	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	c0004	1578	1	1	0	0	0	0	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	c0005	1578	1	0	1	0	0	0	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	c0006	1578	1	0	0	1	0	0	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH3_chr1_26885488_26905467	0/0	c0007	1578	1	0	0	1	0	0	copy fasta	GPATCH3	chr1	26885488	26905467
GPATCH8_chr17_44390281_44508406	1/0	c0001	4509	155	45	22	67	4	16	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	c0002	4509	138	33	34	52	5	14	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	c0003	4509	12	0	2	9	0	1	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	c0004	4509	6	0	0	6	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/1	c0005	4509	3	0	0	0	1	1	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	c0006	4509	2	0	2	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	c0007	4509	1	0	1	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	c0008	4509	1	1	0	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	c0009	4509	1	1	0	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	c0010	4509	1	1	0	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	c0011	4509	1	0	0	0	0	1	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	c0012	4509	1	0	0	0	0	1	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	c0013	4509	1	1	0	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	c0014	4509	1	0	1	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	c0015	4509	1	1	0	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPATCH8_chr17_44390281_44508406	0/0	c0016	4509	1	1	0	0	0	0	copy fasta	GPATCH8	chr17	44390281	44508406
GPBAR1_chr2_218256015_218268861	1/1	c0001	993	389	92	75	172	13	35	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	c0002	993	5	0	3	1	1	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	c0003	993	2	0	0	0	0	2	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	c0004	993	2	0	0	1	0	1	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	c0005	993	1	0	0	1	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	c0006	993	1	0	0	1	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	c0007	993	1	1	0	0	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	c0008	993	1	0	0	1	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	c0009	993	1	0	0	1	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	c0010	993	1	1	0	0	0	0	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	c0011	993	1	0	0	0	0	1	copy fasta	GPBAR1	chr2	218256015	218268861
GPBAR1_chr2_218256015_218268861	0/0	c0012	993	1	0	0	0	0	1	copy fasta	GPBAR1	chr2	218256015	218268861
GPBP1L1_chr1_45622304_45691533	1/1	c0001	1425	173	50	39	56	8	18	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	c0002	1425	95	20	20	41	4	10	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	c0003	1425	11	0	0	11	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	c0004	1425	7	6	1	0	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	c0005	1425	2	0	0	2	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	c0006	1425	1	1	0	0	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	c0007	1425	1	1	0	0	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	c0008	1425	1	0	0	1	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1L1_chr1_45622304_45691533	0/0	c0009	1425	1	0	0	1	0	0	copy fasta	GPBP1L1	chr1	45622304	45691533
GPBP1_chr5_57169059_57269673	0/1	c0001	1422	254	89	52	73	6	33	copy fasta	GPBP1	chr5	57169059	57269673