JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPBP1_chr5_57169059_57269673	1/0	c0002	1422	23	2	9	0	4	7	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	c0003	1422	3	0	2	0	0	1	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	c0004	1422	3	0	0	0	0	3	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	c0005	1422	2	2	0	0	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	c0006	1422	1	1	0	0	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	c0007	1422	1	0	1	0	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	c0008	1422	1	0	0	1	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	c0009	1422	1	0	0	1	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPBP1_chr5_57169059_57269673	0/0	c0010	1404	1	0	0	1	0	0	copy fasta	GPBP1	chr5	57169059	57269673
GPC1_chr2_240430663_240473076	1/0	c0001	1677	111	1	19	75	3	12	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/1	c0002	1677	77	23	25	12	8	8	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0003	1677	69	7	15	38	1	8	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0004	1677	37	17	6	2	3	9	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0005	1677	20	12	4	3	0	1	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0006	1677	18	7	7	2	0	2	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0007	1677	15	8	2	0	1	4	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0008	1677	9	8	1	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0009	1677	8	0	0	8	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0010	1677	5	5	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0011	1677	4	0	0	2	0	2	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0012	1677	3	0	2	1	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0013	1677	3	3	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0014	1677	3	2	1	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0015	1677	2	0	0	0	1	1	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0016	1677	2	0	0	2	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0017	1677	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0018	1677	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0019	1677	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0020	1677	1	0	0	1	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0021	1677	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0022	1677	1	0	0	0	0	1	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0023	1677	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0024	1677	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0025	1677	1	0	0	0	1	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0026	1677	1	0	0	1	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0027	1677	1	0	0	1	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC1_chr2_240430663_240473076	0/0	c0028	1677	1	1	0	0	0	0	copy fasta	GPC1	chr2	240430663	240473076
GPC2_chr7_100164606_100182381	1/1	c0001	1740	336	61	55	160	14	44	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	c0002	1740	29	0	7	12	4	6	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	c0003	1740	19	19	0	0	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	c0004	1740	6	5	1	0	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	c0005	1740	1	1	0	0	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	c0006	1716	1	0	0	1	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	c0007	1740	1	1	0	0	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	c0008	1740	1	0	1	0	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	c0009	1740	1	0	0	1	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	c0010	1740	1	0	1	0	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	c0011	1740	1	0	0	1	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	c0012	1740	1	1	0	0	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC2_chr7_100164606_100182381	0/0	c0013	1752	1	0	0	1	0	0	copy fasta	GPC2	chr7	100164606	100182381