JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPC2_chr7_100164606_100182381	0/0	c0014	1740	1	0	1	0	0	0	copy fasta	GPC2	chr7	100164606	100182381
GPC3_chrX_133530745_133990594	1/1	c0001	1743	136	25	22	65	5	17	copy fasta	GPC3	chrX	133530745	133990594
GPC3_chrX_133530745_133990594	0/0	c0002	1743	13	13	0	0	0	0	copy fasta	GPC3	chrX	133530745	133990594
GPC3_chrX_133530745_133990594	0/0	c0003	1743	1	0	1	0	0	0	copy fasta	GPC3	chrX	133530745	133990594
GPC3_chrX_133530745_133990594	0/0	c0004	1743	1	0	0	0	0	1	copy fasta	GPC3	chrX	133530745	133990594
GPC3_chrX_133530745_133990594	0/0	c0005	1741	1	0	0	1	0	0	copy fasta	GPC3	chrX	133530745	133990594
GPC4_chrX_133295103_133420489	1/1	c0001	1671	118	20	20	61	4	11	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	c0002	1671	96	27	15	36	2	16	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	c0003	1672	1	0	0	1	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	c0004	1671	1	1	0	0	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	c0005	1671	1	0	0	0	1	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	c0006	1671	1	0	0	1	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	c0007	1671	1	0	0	0	0	1	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	c0008	1672	1	0	0	1	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC4_chrX_133295103_133420489	0/0	c0009	1674	1	0	0	1	0	0	copy fasta	GPC4	chrX	133295103	133420489
GPC5_chr13_91393621_92872237	0/0	c0001	1719	31	25	4	0	0	2	copy fasta	GPC5	chr13	91393621	92872237
GPC5_chr13_91393621_92872237	0/0	c0002	1719	4	4	0	0	0	0	copy fasta	GPC5	chr13	91393621	92872237
GPC5_chr13_91393621_92872237	0/0	c0003	1719	3	3	0	0	0	0	copy fasta	GPC5	chr13	91393621	92872237
GPC5_chr13_91393621_92872237	0/0	c0004	1719	2	2	0	0	0	0	copy fasta	GPC5	chr13	91393621	92872237
GPC5_chr13_91393621_92872237	0/0	c0005	1719	1	1	0	0	0	0	copy fasta	GPC5	chr13	91393621	92872237
GPC5_chr13_91393621_92872237	0/0	c0006	1719	1	1	0	0	0	0	copy fasta	GPC5	chr13	91393621	92872237
GPC6_chr13_93221807_94413020	0/0	c0001	1668	56	41	10	0	1	4	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	c0002	1668	12	2	4	5	1	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	c0003	1668	5	3	1	1	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	c0004	1668	2	1	1	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPC6_chr13_93221807_94413020	0/0	c0005	1668	1	1	0	0	0	0	copy fasta	GPC6	chr13	93221807	94413020
GPCPD1_chr20_5539439_5616006	1/1	c0001	2019	308	68	44	149	12	33	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	c0002	2019	52	18	5	26	1	2	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	c0003	2019	10	0	2	8	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	c0004	2019	6	0	4	0	1	1	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	c0005	2019	3	1	0	0	0	2	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	c0006	2019	2	2	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	c0007	2019	1	0	0	1	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	c0008	2019	1	1	0	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	c0009	2019	1	0	1	0	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	c0010	2019	1	0	0	1	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPCPD1_chr20_5539439_5616006	0/0	c0011	2019	1	0	0	1	0	0	copy fasta	GPCPD1	chr20	5539439	5616006
GPD1L_chr3_32101620_32173709	1/1	c0001	1056	309	63	54	152	12	26	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	c0002	1056	43	23	10	0	2	8	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	c0003	1056	3	2	1	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	c0004	1056	1	1	0	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	c0005	1056	1	1	0	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	c0006	1056	1	0	0	1	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	c0007	1056	1	0	0	1	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1L_chr3_32101620_32173709	0/0	c0008	1056	1	0	1	0	0	0	copy fasta	GPD1L	chr3	32101620	32173709
GPD1_chr12_50099008_50116313	1/1	c0001	1050	327	84	58	150	5	28	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	c0002	1050	60	7	20	19	5	9	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	c0003	1050	4	0	0	4	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	c0004	1050	4	0	0	4	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	c0005	1050	1	0	0	1	0	0	copy fasta	GPD1	chr12	50099008	50116313