Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AIPL1_chr17_6418738_6440121	0/0	c0010	1155	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	c0011	1155	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	c0012	1155	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	c0013	1155	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	c0014	1155	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	c0015	1155	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	c0016	1155	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	c0017	1155	1	0	1	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	c0018	1155	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIP_chr11_67478026_67496103	0/1	c0001	993	236	29	63	104	9	30	copy fasta	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	1/0	c0002	993	48	45	2	0	0	0	copy fasta	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	c0003	993	46	3	3	37	1	2	copy fasta	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	c0004	993	7	7	0	0	0	0	copy fasta	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	c0005	993	2	2	0	0	0	0	copy fasta	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	c0006	993	1	1	0	0	0	0	copy fasta	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	c0007	993	1	0	0	1	0	0	copy fasta	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	c0008	993	1	1	0	0	0	0	copy fasta	AIP	chr11	67478026	67496103
AIRE_chr21_44280876_44303648	1/1	c0001	1638	97	10	14	49	4	18	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0002	1638	46	3	2	40	0	1	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0003	1638	35	1	8	19	3	4	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0004	1638	30	4	3	22	0	1	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0005	1638	26	5	5	14	0	2	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0006	1638	26	2	17	0	3	4	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0007	1638	15	9	3	1	0	2	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0008	1638	15	2	2	11	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0009	1638	12	5	4	2	1	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0010	1638	11	11	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0011	1638	10	2	1	7	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0012	1638	9	3	2	3	0	1	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0013	1638	9	0	3	4	0	2	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0014	1638	7	5	0	0	0	2	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0015	1638	7	4	1	2	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0016	1638	7	6	1	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0017	1638	6	1	0	1	1	3	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0018	1638	6	0	2	1	2	1	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0019	1638	5	0	2	3	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0020	1638	4	4	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0021	1638	4	3	1	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0022	1638	3	0	2	0	0	1	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0023	1638	3	1	0	1	0	1	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0024	1638	3	0	3	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0025	1638	2	2	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0026	1638	2	2	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0027	1638	2	1	1	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0028	1638	2	0	2	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0029	1638	1	0	1	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0030	1638	1	1	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0031	1638	1	1	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0032	1638	1	0	0	1	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0033	1638	1	0	0	1	0	0	copy fasta	AIRE	chr21	44280876	44303648