JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPD1_chr12_50099008_50116313	0/0	c0006	1050	1	0	0	1	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	c0007	1050	1	1	0	0	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	c0008	1050	1	1	0	0	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	c0009	1050	1	1	0	0	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	c0010	1050	1	1	0	0	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	c0011	1050	1	0	0	1	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	c0012	1050	1	0	0	1	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	c0013	1050	1	0	0	0	0	1	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	c0014	1050	1	1	0	0	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD1_chr12_50099008_50116313	0/0	c0015	1050	1	0	0	1	0	0	copy fasta	GPD1	chr12	50099008	50116313
GPD2_chr2_156431379_156591403	0/0	c0001	2184	160	27	24	82	3	24	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	1/1	c0002	2184	78	23	17	27	2	7	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	c0003	2184	8	8	0	0	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	c0004	2184	3	0	1	0	1	1	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	c0005	2184	2	0	0	2	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	c0006	2184	1	0	0	1	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	c0007	2184	1	0	0	1	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPD2_chr2_156431379_156591403	0/0	c0008	2184	1	0	0	1	0	0	copy fasta	GPD2	chr2	156431379	156591403
GPER1_chr7_1083113_1098810	1/0	c0001	1128	311	52	47	169	10	32	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/1	c0002	1128	38	7	13	4	5	8	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0003	1128	34	29	4	0	1	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0004	1128	23	1	10	8	1	3	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0005	1128	14	0	0	14	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0006	1128	5	1	2	0	1	1	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0007	1128	4	1	1	1	0	1	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0008	1128	3	0	2	1	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0009	1128	2	0	0	2	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0010	1128	2	0	2	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0011	1128	1	1	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0012	1128	1	0	0	0	0	1	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0013	1128	1	1	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0014	1128	1	0	1	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0015	1128	1	0	0	1	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0016	1128	1	1	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0017	1128	1	0	0	1	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0018	1128	1	1	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0019	1128	1	1	0	0	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPER1_chr7_1083113_1098810	0/0	c0020	1128	1	0	0	1	0	0	copy fasta	GPER1	chr7	1083113	1098810
GPHA2_chr11_64929471_64940893	1/1	c0001	390	424	85	70	209	16	42	copy fasta	GPHA2	chr11	64929471	64940893
GPHA2_chr11_64929471_64940893	0/0	c0002	390	3	3	0	0	0	0	copy fasta	GPHA2	chr11	64929471	64940893
GPHA2_chr11_64929471_64940893	0/0	c0003	390	1	0	0	1	0	0	copy fasta	GPHA2	chr11	64929471	64940893
GPHB5_chr14_63307835_63323935	1/1	c0001	393	397	98	79	170	15	33	copy fasta	GPHB5	chr14	63307835	63323935
GPHB5_chr14_63307835_63323935	0/0	c0002	393	19	0	0	19	0	0	copy fasta	GPHB5	chr14	63307835	63323935
GPHB5_chr14_63307835_63323935	0/0	c0003	393	2	0	0	0	0	2	copy fasta	GPHB5	chr14	63307835	63323935
GPHB5_chr14_63307835_63323935	0/0	c0004	393	2	0	1	0	1	0	copy fasta	GPHB5	chr14	63307835	63323935
GPHB5_chr14_63307835_63323935	0/0	c0005	393	1	0	0	0	0	1	copy fasta	GPHB5	chr14	63307835	63323935
GPHB5_chr14_63307835_63323935	0/0	c0006	393	1	0	0	1	0	0	copy fasta	GPHB5	chr14	63307835	63323935
GPHN_chr14_66503147_67186803	1/1	c0001	2310	230	58	48	104	4	14	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	c0002	2310	2	2	0	0	0	0	copy fasta	GPHN	chr14	66503147	67186803
GPHN_chr14_66503147_67186803	0/0	c0003	2310	2	0	2	0	0	0	copy fasta	GPHN	chr14	66503147	67186803