JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPN3_chr12_110447486_110473257	1/1	c0001	855	316	90	63	110	16	35	copy fasta	GPN3	chr12	110447486	110473257
GPN3_chr12_110447486_110473257	0/0	c0002	855	2	0	0	0	0	2	copy fasta	GPN3	chr12	110447486	110473257
GPN3_chr12_110447486_110473257	0/0	c0003	855	2	0	2	0	0	0	copy fasta	GPN3	chr12	110447486	110473257
GPN3_chr12_110447486_110473257	0/0	c0004	855	2	0	0	2	0	0	copy fasta	GPN3	chr12	110447486	110473257
GPN3_chr12_110447486_110473257	0/0	c0005	855	1	0	0	0	0	1	copy fasta	GPN3	chr12	110447486	110473257
GPN3_chr12_110447486_110473257	0/0	c0006	855	1	0	1	0	0	0	copy fasta	GPN3	chr12	110447486	110473257
GPNMB_chr7_23241775_23280108	1/1	c0001	1683	132	32	18	57	6	17	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0002	1683	112	38	24	31	4	15	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0003	1683	69	1	13	47	2	6	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0004	1683	20	4	8	4	0	4	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0005	1683	14	0	0	14	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0006	1683	4	4	0	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0007	1683	4	4	0	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0008	1683	4	3	1	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0009	1683	3	2	1	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0010	1683	3	0	0	3	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0011	1683	3	0	0	3	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0012	1683	3	3	0	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0013	1683	2	0	2	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0014	1683	1	1	0	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0015	1683	1	0	0	1	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0016	1683	1	0	0	0	0	1	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0017	1683	1	0	0	0	0	1	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0018	1683	1	0	1	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0019	1683	1	1	0	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPNMB_chr7_23241775_23280108	0/0	c0020	1683	1	1	0	0	0	0	copy fasta	GPNMB	chr7	23241775	23280108
GPR101_chrX_137018929_137038995	1/0	c0001	1527	162	38	32	72	4	15	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/1	c0002	1527	63	2	11	40	5	4	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	c0003	1527	55	15	11	17	2	10	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	c0004	1527	18	14	1	3	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	c0005	1527	2	1	1	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	c0006	1527	2	2	0	0	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	c0007	1530	1	0	0	1	0	0	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	c0008	1527	1	0	0	0	0	1	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	c0009	1527	1	0	0	0	0	1	copy fasta	GPR101	chrX	137018929	137038995
GPR101_chrX_137018929_137038995	0/0	c0010	1527	1	0	0	0	0	1	copy fasta	GPR101	chrX	137018929	137038995
GPR107_chr9_130048906_130145164	1/1	c0001	1659	277	61	60	108	10	36	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	c0002	1659	11	9	2	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	c0003	1659	9	2	1	0	1	5	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	c0004	1659	5	3	1	0	0	1	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	c0005	1659	1	1	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	c0006	1659	1	0	0	0	1	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	c0007	1659	1	1	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR107_chr9_130048906_130145164	0/0	c0008	1659	1	1	0	0	0	0	copy fasta	GPR107	chr9	130048906	130145164
GPR108_chr19_6724914_6742580	0/0	c0001	1632	226	53	30	105	11	27	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0002	1632	76	6	10	53	0	7	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/1	c0003	1632	35	5	20	0	5	4	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	1/0	c0004	1632	25	1	11	5	0	7	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0005	1632	21	3	6	10	0	2	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0006	1632	10	8	1	1	0	0	copy fasta	GPR108	chr19	6724914	6742580