JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR108_chr19_6724914_6742580	0/0	c0007	1632	6	6	0	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0008	1632	4	4	0	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0009	1632	4	0	0	4	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0010	1632	4	0	0	4	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0011	1632	3	3	0	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0012	1632	2	0	2	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0013	1632	2	2	0	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0014	1632	2	0	0	2	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0015	1632	2	2	0	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0016	1632	2	2	0	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0017	1632	1	0	0	0	1	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0018	1632	1	0	1	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0019	1632	1	0	0	0	0	1	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0020	1632	1	0	1	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0021	1632	1	0	0	1	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0022	1632	1	0	0	1	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0023	1632	1	0	0	0	1	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0024	1632	1	0	0	1	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0025	1632	1	1	0	0	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR108_chr19_6724914_6742580	0/0	c0026	1632	1	0	0	1	0	0	copy fasta	GPR108	chr19	6724914	6742580
GPR119_chrX_130374449_130390674	1/1	c0001	1008	276	50	54	132	11	27	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	c0002	1008	19	18	1	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	c0003	1008	3	3	0	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	c0004	1008	2	2	0	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	c0005	1008	1	1	0	0	0	0	copy fasta	GPR119	chrX	130374449	130390674
GPR119_chrX_130374449_130390674	0/0	c0006	1014	1	0	0	0	0	1	copy fasta	GPR119	chrX	130374449	130390674
GPR12_chr13_26750200_26765786	1/1	c0001	1005	373	90	71	159	15	36	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	c0002	1005	3	3	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	c0003	1005	2	2	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	c0004	1005	1	0	0	1	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	c0005	1005	1	0	0	0	1	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	c0006	1005	1	0	1	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR12_chr13_26750200_26765786	0/0	c0007	1005	1	1	0	0	0	0	copy fasta	GPR12	chr13	26750200	26765786
GPR132_chr14_105044395_105070430	1/1	c0001	1143	322	84	54	129	14	39	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	c0002	1143	59	1	10	44	0	4	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	c0003	1143	12	0	0	12	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	c0004	1143	3	0	0	3	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	c0005	1143	2	2	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	c0006	1143	1	0	1	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	c0007	1143	1	0	0	1	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	c0008	1143	1	0	0	1	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	c0009	1143	1	0	0	0	0	1	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	c0010	1143	1	1	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	c0011	1143	1	0	1	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	c0012	1143	1	1	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR132_chr14_105044395_105070430	0/0	c0013	1143	1	1	0	0	0	0	copy fasta	GPR132	chr14	105044395	105070430
GPR135_chr14_59455759_59470380	1/0	c0001	1485	145	11	32	76	6	19	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/1	c0002	1485	134	31	33	45	5	19	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	c0003	1485	28	18	6	1	3	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	c0004	1487	15	12	3	0	0	0	copy fasta	GPR135	chr14	59455759	59470380