JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR135_chr14_59455759_59470380	0/0	c0005	1485	9	0	0	9	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	c0006	1485	9	0	4	3	2	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	c0007	1485	7	0	0	7	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	c0008	1485	6	6	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	c0009	1485	4	4	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	c0010	1485	3	3	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	c0011	1485	2	2	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	c0012	1485	1	0	0	1	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	c0013	1485	1	0	0	1	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	c0014	1485	1	0	0	1	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	c0015	1485	1	1	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	c0016	1487	1	1	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR135_chr14_59455759_59470380	0/0	c0017	1485	1	1	0	0	0	0	copy fasta	GPR135	chr14	59455759	59470380
GPR137B_chr1_236137539_236213907	1/1	c0001	1200	373	86	67	169	9	40	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	c0002	1200	7	5	2	0	0	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	c0003	1210	1	0	1	0	0	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	c0004	1200	1	1	0	0	0	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	c0005	1200	1	0	0	1	0	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	c0006	1200	1	0	0	1	0	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	c0007	1200	1	0	0	0	1	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137B_chr1_236137539_236213907	0/0	c0008	1200	1	0	0	1	0	0	copy fasta	GPR137B	chr1	236137539	236213907
GPR137C_chr14_52547836_52642713	0/1	c0001	1290	181	45	14	95	4	22	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	c0002	1290	88	13	20	38	7	10	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	1/0	c0003	1290	26	16	2	6	0	1	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	c0004	1290	24	0	3	18	0	3	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	c0005	1290	15	6	4	5	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	c0006	1290	7	0	4	0	1	2	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	c0007	1290	1	1	0	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	c0008	1290	1	0	1	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	c0009	1290	1	0	0	1	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	c0010	1336	1	0	0	1	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137C_chr14_52547836_52642713	0/0	c0011	1269	1	1	0	0	0	0	copy fasta	GPR137C	chr14	52547836	52642713
GPR137_chr11_64280848_64294494	1/1	c0001	1191	386	92	76	161	14	41	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	c0002	1191	5	0	0	5	0	0	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	c0003	1191	3	0	0	3	0	0	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	c0004	1191	2	0	0	1	0	1	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	c0005	1191	2	0	0	0	2	0	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	c0006	1191	1	1	0	0	0	0	copy fasta	GPR137	chr11	64280848	64294494
GPR137_chr11_64280848_64294494	0/0	c0007	1191	1	1	0	0	0	0	copy fasta	GPR137	chr11	64280848	64294494
GPR139_chr16_20023239_20078890	0/1	c0001	1062	229	54	25	122	6	21	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	1/0	c0002	1062	131	38	22	35	8	27	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	c0003	1062	2	0	0	2	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	c0004	1062	1	0	0	1	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR139_chr16_20023239_20078890	0/0	c0005	1062	1	0	1	0	0	0	copy fasta	GPR139	chr16	20023239	20078890
GPR141_chr7_37678766_37748835	1/1	c0001	918	307	73	57	132	11	32	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	c0002	918	49	1	2	34	0	12	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	c0003	918	15	0	0	14	0	1	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	c0004	918	14	11	1	0	1	1	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	c0005	918	5	0	0	5	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	c0006	918	5	5	0	0	0	0	copy fasta	GPR141	chr7	37678766	37748835