JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR141_chr7_37678766_37748835	0/0	c0007	918	1	0	0	1	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	c0008	918	1	1	0	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	c0009	918	1	0	0	1	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	c0010	918	1	0	0	1	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR141_chr7_37678766_37748835	0/0	c0011	918	1	1	0	0	0	0	copy fasta	GPR141	chr7	37678766	37748835
GPR142_chr17_74362506_74377600	0/1	c0001	1125	220	54	44	83	12	26	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0002	1125	194	18	28	126	4	18	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0003	1125	7	5	2	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	1/0	c0004	1125	5	4	0	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0005	1125	4	4	0	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0006	1125	3	0	0	3	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0007	1125	3	3	0	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0008	1125	2	1	1	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0009	1125	2	0	0	2	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0010	1125	2	1	1	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0011	1125	2	0	0	0	0	2	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0012	1125	1	1	0	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0013	1125	1	0	0	1	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0014	1125	1	0	1	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0015	1125	1	0	0	1	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0016	1125	1	0	1	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0017	1125	1	1	0	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0018	1125	1	1	0	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR142_chr17_74362506_74377600	0/0	c0019	1125	1	1	0	0	0	0	copy fasta	GPR142	chr17	74362506	74377600
GPR143_chrX_9720346_9770847	1/1	c0001	1215	259	67	49	101	13	27	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	0/0	c0002	1215	4	4	0	0	0	0	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	0/0	c0003	1215	3	3	0	0	0	0	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	0/0	c0004	1214	1	0	0	1	0	0	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	0/0	c0005	1215	1	1	0	0	0	0	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	0/0	c0006	1219	1	0	0	1	0	0	copy fasta	GPR143	chrX	9720346	9770847
GPR143_chrX_9720346_9770847	0/0	c0007	1215	1	0	0	0	0	1	copy fasta	GPR143	chrX	9720346	9770847
GPR146_chr7_1039546_1064261	1/0	c0001	1002	373	81	63	184	9	35	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	c0002	1002	22	9	6	5	1	1	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	c0003	1002	21	4	8	0	3	6	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/1	c0004	1002	4	0	1	0	1	1	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	c0005	1002	2	0	0	0	0	2	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	c0006	1002	2	1	0	0	1	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	c0007	1002	1	0	0	0	1	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	c0008	1002	1	1	0	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	c0009	1002	1	0	0	0	0	1	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	c0010	987	1	0	1	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	c0011	1002	1	0	1	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	c0012	1002	1	1	0	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	c0013	1002	1	1	0	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	c0014	1002	1	0	0	1	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	c0015	1002	1	1	0	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR146_chr7_1039546_1064261	0/0	c0016	1002	1	1	0	0	0	0	copy fasta	GPR146	chr7	1039546	1064261
GPR148_chr2_130724070_130735336	0/1	c0001	1044	302	57	56	145	12	31	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	c0002	1044	20	19	1	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	1/0	c0003	1044	15	6	5	1	2	0	copy fasta	GPR148	chr2	130724070	130735336