JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR148_chr2_130724070_130735336	0/0	c0004	1044	10	0	0	9	0	1	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	c0005	1044	4	4	0	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	c0006	1044	2	2	0	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	c0007	1044	2	2	0	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	c0008	1044	2	2	0	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	c0009	1044	1	1	0	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	c0010	1044	1	1	0	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	c0011	1044	1	1	0	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	c0012	1044	1	0	0	1	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR148_chr2_130724070_130735336	0/0	c0013	1044	1	1	0	0	0	0	copy fasta	GPR148	chr2	130724070	130735336
GPR149_chr3_154329943_154435190	1/1	c0001	2196	266	60	53	114	10	27	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	c0002	2196	59	6	14	34	0	5	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	c0003	2196	2	2	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	c0004	2196	2	2	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	c0005	2196	1	0	0	1	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	c0006	2196	1	0	0	1	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	c0007	2196	1	1	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	c0008	2196	1	1	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	c0009	2196	1	1	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	c0010	2196	1	1	0	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR149_chr3_154329943_154435190	0/0	c0011	2196	1	0	1	0	0	0	copy fasta	GPR149	chr3	154329943	154435190
GPR150_chr5_95615087_95627142	1/0	c0001	1305	361	76	67	167	12	38	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	c0002	1305	58	2	10	33	5	8	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	c0003	1305	13	12	1	0	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	c0004	1305	2	2	0	0	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	c0005	1305	2	0	0	2	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	c0006	1305	2	0	2	0	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	c0007	1305	1	1	0	0	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	c0008	1305	1	1	0	0	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	c0009	1305	1	0	0	1	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	c0010	1305	1	1	0	0	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/1	c0011	1305	1	0	0	0	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	c0012	1305	1	0	0	0	1	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	c0013	1305	1	0	1	0	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	c0014	1305	1	1	0	0	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	c0015	1305	1	0	1	0	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR150_chr5_95615087_95627142	0/0	c0016	1305	1	0	0	1	0	0	copy fasta	GPR150	chr5	95615087	95627142
GPR151_chr5_146508144_146521190	0/1	c0001	1260	194	25	17	134	6	11	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	1/0	c0002	1260	159	49	39	31	8	31	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	c0003	1260	41	17	4	20	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	c0004	1260	18	6	7	0	0	5	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	c0005	1260	3	0	0	3	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	c0006	1260	2	0	1	0	0	1	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	c0007	1260	1	0	0	1	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	c0008	1260	1	0	0	1	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR151_chr5_146508144_146521190	0/0	c0009	1260	1	1	0	0	0	0	copy fasta	GPR151	chr5	146508144	146521190
GPR152_chr11_67446301_67457729	1/0	c0001	1413	265	39	68	118	14	25	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	c0002	1413	39	38	1	0	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	c0003	1413	34	0	1	33	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	c0004	1413	6	6	0	0	0	0	copy fasta	GPR152	chr11	67446301	67457729