JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR152_chr11_67446301_67457729	0/0	c0005	1413	3	0	0	3	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	c0006	1413	2	2	0	0	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	c0007	1413	2	1	1	0	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	c0008	1413	1	0	0	1	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	c0009	1413	1	0	0	1	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	c0010	1413	1	1	0	0	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/1	c0011	1413	1	0	0	0	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	c0012	1413	1	0	1	0	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	c0013	1413	1	1	0	0	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	c0014	1413	1	0	0	0	0	1	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	c0015	1413	1	1	0	0	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR152_chr11_67446301_67457729	0/0	c0016	1413	1	1	0	0	0	0	copy fasta	GPR152	chr11	67446301	67457729
GPR153_chr1_6242353_6266098	0/0	c0001	1830	185	41	41	70	8	25	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	1/1	c0002	1830	93	14	16	41	7	13	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0003	1830	37	0	0	37	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0004	1830	19	13	1	3	1	1	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0005	1830	11	9	2	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0006	1830	9	8	1	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0007	1830	3	3	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0008	1782	3	0	0	3	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0009	1830	2	2	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0010	1830	2	0	0	2	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0011	1830	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0012	1830	1	0	0	1	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0013	1830	1	0	1	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0014	1830	1	0	0	1	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0015	1830	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0016	1830	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0017	1830	1	1	0	0	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0018	1830	1	0	0	1	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0019	1830	1	0	0	1	0	0	copy fasta	GPR153	chr1	6242353	6266098
GPR153_chr1_6242353_6266098	0/0	c0020	1830	1	0	0	0	0	1	copy fasta	GPR153	chr1	6242353	6266098
GPR155_chr2_174426571_174492029	1/0	c0001	2613	195	57	49	50	9	29	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/1	c0002	2613	68	3	13	32	5	14	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	c0003	2613	10	10	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	c0004	2613	8	7	0	0	0	1	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	c0005	2613	4	4	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	c0006	2613	4	4	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	c0007	2613	1	0	0	1	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	c0008	2613	1	0	0	1	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	c0009	2613	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	c0010	2613	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	c0011	2613	1	0	0	0	0	1	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	c0012	2613	1	0	0	1	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	c0013	2613	1	0	0	0	0	1	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	c0014	2613	1	0	0	1	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	c0015	2613	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	c0016	2613	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR155_chr2_174426571_174492029	0/0	c0017	2613	1	1	0	0	0	0	copy fasta	GPR155	chr2	174426571	174492029
GPR156_chr3_120160478_120290222	0/1	c0001	2445	259	62	62	93	7	34	copy fasta	GPR156	chr3	120160478	120290222