JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR156_chr3_120160478_120290222	1/0	c0002	2445	30	9	6	10	2	2	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0003	2445	5	5	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0004	2445	4	4	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0005	2445	3	3	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0006	2445	3	0	0	3	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0007	2445	2	1	1	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0008	2445	2	0	0	2	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0009	2445	2	0	0	2	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0010	2445	2	2	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0011	2445	1	0	0	1	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0012	2445	1	0	0	0	0	1	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0013	2445	1	0	0	1	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0014	2445	1	0	0	0	0	1	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0015	2445	1	0	1	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0016	2445	1	1	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0017	2445	1	0	1	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0018	2445	1	1	0	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0019	2445	1	0	1	0	0	0	copy fasta	GPR156	chr3	120160478	120290222
GPR156_chr3_120160478_120290222	0/0	c0020	2445	1	0	0	0	1	0	copy fasta	GPR156	chr3	120160478	120290222
GPR157_chr1_9095305_9134102	1/1	c0001	1008	251	52	42	113	9	33	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0002	1008	60	0	18	28	3	11	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0003	1008	47	1	10	32	0	4	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0004	1008	10	4	3	3	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0005	1008	9	7	1	0	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0006	1008	4	4	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0007	1008	3	3	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0008	1008	3	3	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0009	1008	2	2	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0010	1008	2	2	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0011	1008	2	2	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0012	1008	2	2	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0013	1008	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0014	1008	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0015	1008	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0016	1008	1	0	0	0	0	1	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0017	1008	1	0	1	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0018	1008	1	1	0	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0019	1008	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0020	1008	1	0	0	1	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR157_chr1_9095305_9134102	0/0	c0021	1008	1	0	1	0	0	0	copy fasta	GPR157	chr1	9095305	9134102
GPR158_chr10_25170001_25607229	0/0	c0001	3648	57	24	6	23	1	3	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/1	c0002	3648	43	26	5	2	3	6	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0003	3648	16	3	4	3	0	6	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	1/0	c0004	3648	15	0	3	8	2	1	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0005	3648	6	6	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0006	3648	4	3	1	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0007	3648	4	0	0	4	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0008	3648	3	0	0	3	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0009	3648	2	0	0	2	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0010	3648	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229