Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AIRE_chr21_44280876_44303648	0/0	c0034	1638	1	0	0	0	0	1	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0035	1624	1	0	0	1	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0036	1638	1	1	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0037	1638	1	1	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0038	1638	1	1	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0039	1638	1	1	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0040	1591	1	0	1	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0041	1638	1	0	0	0	0	1	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0042	1638	1	0	0	1	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0043	1638	1	0	0	1	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0044	1638	1	0	0	0	0	1	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0045	1638	1	1	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0046	1638	1	1	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0047	1638	1	0	0	1	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0048	1638	1	0	0	1	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0049	1638	1	0	1	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	c0050	1638	1	0	0	1	0	0	copy fasta	AIRE	chr21	44280876	44303648
AJAP1_chr1_4649609_4797534	1/0	c0001	1236	96	33	22	28	3	9	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0002	1236	89	35	9	28	2	15	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/1	c0003	1236	53	8	25	8	6	5	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0004	1236	47	1	11	26	2	7	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0005	1236	14	0	0	10	2	2	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0006	1236	7	6	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0007	1236	7	0	0	7	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0008	1236	6	0	0	5	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0009	1236	2	0	0	2	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0010	1236	2	2	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0011	1236	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0012	1236	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0013	1236	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0014	1236	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0015	1236	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0016	1236	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0017	1236	1	0	0	0	1	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0018	1236	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0019	1236	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0020	1236	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	c0021	1236	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJM1_chr9_136837478_136853801	0/1	c0001	2931	262	60	50	109	9	33	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	1/0	c0002	2931	72	17	24	20	4	6	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0003	2931	4	0	0	4	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0004	2931	2	0	1	0	0	1	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0005	2931	2	1	0	0	0	1	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0006	2931	2	0	0	2	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0007	2931	2	2	0	0	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0008	2931	2	2	0	0	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0009	2931	2	0	0	2	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0010	2931	2	1	0	0	1	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0011	2931	2	2	0	0	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0012	2931	2	1	1	0	0	0	copy fasta	AJM1	chr9	136837478	136853801