JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR158_chr10_25170001_25607229	0/0	c0011	3648	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0012	3648	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0013	3648	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0014	3648	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0015	3648	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0016	3648	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0017	3648	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0018	3648	1	0	1	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0019	3648	1	0	0	1	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0020	3648	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR158_chr10_25170001_25607229	0/0	c0021	3648	1	1	0	0	0	0	copy fasta	GPR158	chr10	25170001	25607229
GPR15LG_chr10_84168801_84190294	1/1	c0001	246	450	98	78	209	17	46	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15LG_chr10_84168801_84190294	0/0	c0002	246	7	0	0	7	0	0	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15LG_chr10_84168801_84190294	0/0	c0003	246	1	0	0	0	1	0	copy fasta	GPR15LG	chr10	84168801	84190294
GPR15_chr3_98526978_98539681	1/1	c0001	1083	336	81	55	147	13	38	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	c0002	1083	110	1	24	76	3	6	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	c0003	1083	5	5	0	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	c0004	1083	5	4	1	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	c0005	1083	3	0	0	3	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	c0006	1083	3	2	1	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	c0007	1083	2	1	1	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	c0008	1083	1	0	1	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	c0009	1083	1	0	1	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	c0010	1083	1	1	0	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	c0011	1083	1	1	0	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	c0012	1083	1	1	0	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR15_chr3_98526978_98539681	0/0	c0013	1083	1	1	0	0	0	0	copy fasta	GPR15	chr3	98526978	98539681
GPR160_chr3_170032995_170090392	1/1	c0001	1017	349	86	72	151	10	28	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	c0002	1017	3	0	0	3	0	0	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	c0003	1017	2	2	0	0	0	0	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	c0004	1017	1	0	0	0	0	1	copy fasta	GPR160	chr3	170032995	170090392
GPR160_chr3_170032995_170090392	0/0	c0005	1017	1	0	0	0	0	1	copy fasta	GPR160	chr3	170032995	170090392
GPR161_chr1_168074542_168141930	1/1	c0001	1590	186	28	29	96	10	21	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	c0002	1590	133	41	34	44	5	9	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	c0003	1590	6	6	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	c0004	1590	5	4	1	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	c0005	1590	2	2	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	c0006	1590	1	1	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	c0007	1590	1	0	0	0	1	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	c0008	1590	1	0	0	0	0	1	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	c0009	1590	1	1	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	c0010	1590	1	1	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	c0011	1590	1	0	0	0	0	1	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	c0012	1590	1	1	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR161_chr1_168074542_168141930	0/0	c0013	1590	1	1	0	0	0	0	copy fasta	GPR161	chr1	168074542	168141930
GPR162_chr12_6816821_6832421	1/0	c0001	1767	182	42	29	79	8	23	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/1	c0002	1767	151	29	24	83	2	12	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0003	1767	61	20	4	34	0	3	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0004	1767	18	1	13	0	2	2	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0005	1767	10	0	7	0	2	1	copy fasta	GPR162	chr12	6816821	6832421